Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC005592.1-201ENST00000566527 1640 ntBASIC1.41□□□□□ -2.18
TNFRSF4P43489 RNU6-271P-201ENST00000363858 105 ntBASIC1.41□□□□□ -2.18
TNFRSF4P43489 RNU6-961P-201ENST00000363893 105 ntBASIC1.41□□□□□ -2.18
TNFRSF4P43489 RNU6-1310P-201ENST00000384153 107 ntBASIC1.41□□□□□ -2.18
TNFRSF4P43489 RNU6-474P-201ENST00000384243 107 ntBASIC1.41□□□□□ -2.18
TNFRSF4P43489 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.41□□□□□ -2.18
TNFRSF4P43489 MIR548P-201ENST00000408336 84 ntBASIC1.41□□□□□ -2.18
TNFRSF4P43489 MIR1276-201ENST00000408707 83 ntBASIC1.41□□□□□ -2.18
TNFRSF4P43489 MTND4P19-201ENST00000446659 478 ntBASIC1.41□□□□□ -2.18
TNFRSF4P43489 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.41□□□□□ -2.18
TNFRSF4P43489 RNU7-34P-201ENST00000459394 64 ntBASIC1.41□□□□□ -2.18
TNFRSF4P43489 HMGN1P7-201ENST00000491722 313 ntBASIC1.41□□□□□ -2.18
TNFRSF4P43489 AC010469.2-201ENST00000496412 480 ntBASIC1.41□□□□□ -2.18
TNFRSF4P43489 RNA5SP445-201ENST00000515889 115 ntBASIC1.41□□□□□ -2.18
TNFRSF4P43489 SNORA40.14-201ENST00000516543 86 ntBASIC1.41□□□□□ -2.18
TNFRSF4P43489 RNU6-1012P-201ENST00000516606 109 ntBASIC1.41□□□□□ -2.18
TNFRSF4P43489 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC1.41□□□□□ -2.18
TNFRSF4P43489 AC022432.1-201ENST00000595739 310 ntBASIC1.41□□□□□ -2.18
TNFRSF4P43489 MIR6504-201ENST00000613520 61 ntBASIC1.41□□□□□ -2.18
TNFRSF4P43489 AC095038.3-201ENST00000634439 195 ntBASIC1.41□□□□□ -2.18
TNFRSF4P43489 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
TNFRSF4P43489 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
TNFRSF4P43489 AC091812.1-201ENST00000432235 1948 ntBASIC1.4□□□□□ -2.18
TNFRSF4P43489 Y_RNA.11-201ENST00000362375 109 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 Y_RNA.128-201ENST00000363391 112 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 SNORA4.2-201ENST00000365313 147 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 Y_RNA.424-201ENST00000384063 103 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 Y_RNA.508-201ENST00000384502 114 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 RNU6-950P-201ENST00000384651 107 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 MIR518E-201ENST00000385252 88 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 RNU6-1186P-201ENST00000410429 97 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 PMCHL1-202ENST00000423102 261 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 SDAD1P3-201ENST00000427380 333 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.4□□□□□ -2.19
TNFRSF4P43489 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.4□□□□□ -2.19
TNFRSF4P43489 AC245517.4-201ENST00000448601 281 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 RPS26P55-201ENST00000471178 356 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 RPS27P22-201ENST00000478056 241 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 AL163195.1-201ENST00000496941 348 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 SNORA25.10-201ENST00000515926 124 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 RNU6-988P-201ENST00000519081 107 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
TNFRSF4P43489 AP002001.1-203ENST00000534002 267 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 AL137100.2-201ENST00000555786 315 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 MIR3122-201ENST00000577243 73 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 AC134503.1-201ENST00000633048 54 ntBASIC1.4□□□□□ -2.19
TNFRSF4P43489 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.39□□□□□ -2.19
TNFRSF4P43489 SNORD33-201ENST00000362761 85 ntBASIC1.39□□□□□ -2.19
TNFRSF4P43489 Y_RNA.116-201ENST00000363292 103 ntBASIC1.39□□□□□ -2.19
TNFRSF4P43489 Y_RNA.148-201ENST00000363557 117 ntBASIC1.39□□□□□ -2.19
TNFRSF4P43489 RNU6-407P-201ENST00000365280 104 ntBASIC1.39□□□□□ -2.19
TNFRSF4P43489 Y_RNA.526-201ENST00000384572 110 ntBASIC1.39□□□□□ -2.19
TNFRSF4P43489 MRPL35P1-201ENST00000404272 572 ntBASIC1.39□□□□□ -2.19
TNFRSF4P43489 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.39□□□□□ -2.19
TNFRSF4P43489 SNORD65B-201ENST00000459126 73 ntBASIC1.39□□□□□ -2.19
TNFRSF4P43489 AC079140.2-201ENST00000506193 142 ntBASIC1.39□□□□□ -2.19
TNFRSF4P43489 Y_RNA.701-201ENST00000516812 110 ntBASIC1.39□□□□□ -2.19
TNFRSF4P43489 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.39□□□□□ -2.19
TNFRSF4P43489 AC023157.2-201ENST00000540596 141 ntBASIC1.39□□□□□ -2.19
TNFRSF4P43489 AC005176.2-201ENST00000596933 147 ntBASIC1.39□□□□□ -2.19
TNFRSF4P43489 AL390123.1-201ENST00000603216 237 ntBASIC1.39□□□□□ -2.19
TNFRSF4P43489 AP001485.1-201ENST00000604799 199 ntBASIC1.39□□□□□ -2.19
TNFRSF4P43489 MIR6078-201ENST00000611069 100 ntBASIC1.39□□□□□ -2.19
TNFRSF4P43489 AC240442.1-201ENST00000616055 283 ntBASIC1.39□□□□□ -2.19
TNFRSF4P43489 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.39□□□□□ -2.19
TNFRSF4P43489 MIR302D-201ENST00000362275 68 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 Y_RNA.28-201ENST00000362554 111 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 RNU6-454P-201ENST00000364292 107 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 SNORD1A-201ENST00000364968 72 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 Y_RNA.355-201ENST00000365462 98 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 SNORD14.1-201ENST00000365609 90 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 SNORA22B-201ENST00000383876 138 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 RNU6-203P-201ENST00000384038 104 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 RNU6-20P-201ENST00000384106 107 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 Y_RNA.471-201ENST00000384312 102 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 RNA5SP109-201ENST00000391010 116 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 MIR1302-11-201ENST00000408051 138 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 MIR1302-9-201ENST00000408365 138 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 MIR1302-10-201ENST00000408734 138 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 AL161935.2-201ENST00000414627 60 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 AL354751.2-201ENST00000415471 210 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.38□□□□□ -2.19
TNFRSF4P43489 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.38□□□□□ -2.19
TNFRSF4P43489 RNU1-123P-201ENST00000458950 160 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 RPS26P45-201ENST00000471748 340 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 AC010598.1-201ENST00000510378 103 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 RNU6-475P-201ENST00000516073 104 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 RNU6-1153P-201ENST00000516760 105 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 AC040926.1-201ENST00000530195 238 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.38□□□□□ -2.19
TNFRSF4P43489 Y_RNA.772-201ENST00000606692 102 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 MIR1302-2-201ENST00000607096 138 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 AC004467.1-201ENST00000615678 330 ntBASIC1.38□□□□□ -2.19
TNFRSF4P43489 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
TNFRSF4P43489 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
TNFRSF4P43489 MIR410-201ENST00000362222 80 ntBASIC1.37□□□□□ -2.19
TNFRSF4P43489 RNU6-626P-201ENST00000363354 107 ntBASIC1.37□□□□□ -2.19
TNFRSF4P43489 Y_RNA.216-201ENST00000364205 93 ntBASIC1.37□□□□□ -2.19
TNFRSF4P43489 Y_RNA.796-201ENST00000364268 102 ntBASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 168.4 ms