Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
PTPN9P43378 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
PTPN9P43378 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.97□□□□□ -2.09
PTPN9P43378 SNORD114-1-201ENST00000362705 72 ntBASIC1.97□□□□□ -2.09
PTPN9P43378 Y_RNA.84-201ENST00000363011 104 ntBASIC1.97□□□□□ -2.09
PTPN9P43378 RNU1-22P-201ENST00000363334 158 ntBASIC1.97□□□□□ -2.09
PTPN9P43378 Y_RNA.286-201ENST00000364813 102 ntBASIC1.97□□□□□ -2.09
PTPN9P43378 Y_RNA.329-201ENST00000365209 107 ntBASIC1.97□□□□□ -2.09
PTPN9P43378 RNU6-326P-201ENST00000365480 107 ntBASIC1.97□□□□□ -2.09
PTPN9P43378 RNU6-505P-201ENST00000384427 107 ntBASIC1.97□□□□□ -2.09
PTPN9P43378 RNU6-1203P-201ENST00000410703 110 ntBASIC1.97□□□□□ -2.09
PTPN9P43378 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.97□□□□□ -2.09
PTPN9P43378 RPL23AP3-201ENST00000453844 468 ntBASIC1.97□□□□□ -2.09
PTPN9P43378 HMGN1P10-201ENST00000474557 553 ntBASIC1.97□□□□□ -2.09
PTPN9P43378 AC098869.1-201ENST00000481627 292 ntBASIC1.97□□□□□ -2.09
PTPN9P43378 RPL36AP21-201ENST00000490372 323 ntBASIC1.97□□□□□ -2.09
PTPN9P43378 RNU6-1278P-201ENST00000516130 107 ntBASIC1.97□□□□□ -2.09
PTPN9P43378 RNU1-142P-201ENST00000516682 145 ntBASIC1.97□□□□□ -2.09
PTPN9P43378 RNU7-128P-201ENST00000517247 62 ntBASIC1.97□□□□□ -2.09
PTPN9P43378 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.97□□□□□ -2.09
PTPN9P43378 AL161670.1-201ENST00000554348 137 ntBASIC1.97□□□□□ -2.09
PTPN9P43378 AL096840.1-201ENST00000603287 93 ntBASIC1.97□□□□□ -2.09
PTPN9P43378 AC012493.3-201ENST00000604494 112 ntBASIC1.97□□□□□ -2.09
PTPN9P43378 U6.108-201ENST00000637764 58 ntBASIC1.97□□□□□ -2.09
PTPN9P43378 ZNF702P-202ENST00000434269 1966 ntBASIC1.97□□□□□ -2.09
PTPN9P43378 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
PTPN9P43378 RNU6-407P-201ENST00000365280 104 ntBASIC1.96□□□□□ -2.1
PTPN9P43378 RNU6-117P-201ENST00000365415 107 ntBASIC1.96□□□□□ -2.1
PTPN9P43378 Y_RNA.541-201ENST00000384640 113 ntBASIC1.96□□□□□ -2.1
PTPN9P43378 Y_RNA.569-201ENST00000384749 103 ntBASIC1.96□□□□□ -2.1
PTPN9P43378 SNORA53-201ENST00000391141 249 ntBASIC1.96□□□□□ -2.1
PTPN9P43378 RNA5SP212-201ENST00000391223 107 ntBASIC1.96□□□□□ -2.1
PTPN9P43378 AC019129.1-201ENST00000403786 261 ntBASIC1.96□□□□□ -2.1
PTPN9P43378 SUMO2P12-201ENST00000405924 140 ntBASIC1.96□□□□□ -2.1
PTPN9P43378 EBAG9P1-201ENST00000418955 543 ntBASIC1.96□□□□□ -2.1
PTPN9P43378 AC107393.1-201ENST00000512403 346 ntBASIC1.96□□□□□ -2.1
PTPN9P43378 RNVU1-2-201ENST00000516326 135 ntBASIC1.96□□□□□ -2.1
PTPN9P43378 MIR4298-201ENST00000584380 73 ntBASIC1.96□□□□□ -2.1
PTPN9P43378 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.96□□□□□ -2.1
PTPN9P43378 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.95□□□□□ -2.1
PTPN9P43378 AC010615.1-201ENST00000594254 1764 ntBASIC1.95□□□□□ -2.1
PTPN9P43378 MIR335-201ENST00000362173 94 ntBASIC1.95□□□□□ -2.1
PTPN9P43378 RNU6-238P-201ENST00000363313 106 ntBASIC1.95□□□□□ -2.1
PTPN9P43378 Y_RNA.124-201ENST00000363339 93 ntBASIC1.95□□□□□ -2.1
PTPN9P43378 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.95□□□□□ -2.1
PTPN9P43378 MIR215-201ENST00000384858 110 ntBASIC1.95□□□□□ -2.1
PTPN9P43378 MIR1302-6-201ENST00000408466 90 ntBASIC1.95□□□□□ -2.1
PTPN9P43378 MIR1261-201ENST00000408659 82 ntBASIC1.95□□□□□ -2.1
PTPN9P43378 AC245047.4-201ENST00000433189 144 ntBASIC1.95□□□□□ -2.1
PTPN9P43378 RNU7-94P-201ENST00000459576 63 ntBASIC1.95□□□□□ -2.1
PTPN9P43378 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.95□□□□□ -2.1
PTPN9P43378 UBL5P3-201ENST00000475112 231 ntBASIC1.95□□□□□ -2.1
PTPN9P43378 TRBVB-201ENST00000477100 408 ntBASIC1.95□□□□□ -2.1
PTPN9P43378 RNA5SP182-201ENST00000516064 82 ntBASIC1.95□□□□□ -2.1
PTPN9P43378 RNU2-31P-201ENST00000516954 155 ntBASIC1.95□□□□□ -2.1
PTPN9P43378 RNU7-172P-201ENST00000517125 64 ntBASIC1.95□□□□□ -2.1
PTPN9P43378 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.95□□□□□ -2.1
PTPN9P43378 AC023157.2-201ENST00000540596 141 ntBASIC1.95□□□□□ -2.1
PTPN9P43378 MIR5094-201ENST00000578766 85 ntBASIC1.95□□□□□ -2.1
PTPN9P43378 AC037487.3-201ENST00000606668 112 ntBASIC1.95□□□□□ -2.1
PTPN9P43378 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.95□□□□□ -2.1
PTPN9P43378 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
PTPN9P43378 SNORA63D-201ENST00000364359 132 ntBASIC1.94□□□□□ -2.1
PTPN9P43378 Y_RNA.376-201ENST00000365638 108 ntBASIC1.94□□□□□ -2.1
PTPN9P43378 Y_RNA.456-201ENST00000384232 111 ntBASIC1.94□□□□□ -2.1
PTPN9P43378 RNU6-472P-201ENST00000384299 107 ntBASIC1.94□□□□□ -2.1
PTPN9P43378 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
PTPN9P43378 RNA5SP323-201ENST00000391094 133 ntBASIC1.94□□□□□ -2.1
PTPN9P43378 RNA5SP467-201ENST00000391274 118 ntBASIC1.94□□□□□ -2.1
PTPN9P43378 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC1.94□□□□□ -2.1
PTPN9P43378 snoU13.15-201ENST00000459407 104 ntBASIC1.94□□□□□ -2.1
PTPN9P43378 AC027419.1-201ENST00000522976 328 ntBASIC1.94□□□□□ -2.1
PTPN9P43378 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.94□□□□□ -2.1
PTPN9P43378 DEFB117-201ENST00000602356 141 ntBASIC1.94□□□□□ -2.1
PTPN9P43378 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.94□□□□□ -2.1
PTPN9P43378 AL773524.1-201ENST00000614065 229 ntBASIC1.94□□□□□ -2.1
PTPN9P43378 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.94□□□□□ -2.1
PTPN9P43378 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
PTPN9P43378 Y_RNA.368-201ENST00000365547 113 ntBASIC1.93□□□□□ -2.1
PTPN9P43378 Y_RNA.418-201ENST00000384029 102 ntBASIC1.93□□□□□ -2.1
PTPN9P43378 Y_RNA.461-201ENST00000384263 103 ntBASIC1.93□□□□□ -2.1
PTPN9P43378 SNORA8-201ENST00000384574 139 ntBASIC1.93□□□□□ -2.1
PTPN9P43378 MIR562-201ENST00000384894 95 ntBASIC1.93□□□□□ -2.1
PTPN9P43378 MIR568-201ENST00000385036 95 ntBASIC1.93□□□□□ -2.1
PTPN9P43378 RNA5SP489-201ENST00000410986 109 ntBASIC1.93□□□□□ -2.1
PTPN9P43378 AC009310.1-201ENST00000414414 451 ntBASIC1.93□□□□□ -2.1
PTPN9P43378 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.93□□□□□ -2.1
PTPN9P43378 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.93□□□□□ -2.1
PTPN9P43378 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.93□□□□□ -2.1
PTPN9P43378 snoU13.26-201ENST00000459452 105 ntBASIC1.93□□□□□ -2.1
PTPN9P43378 RNU6-1338P-201ENST00000516328 91 ntBASIC1.93□□□□□ -2.1
PTPN9P43378 RNU6-1337P-201ENST00000516525 95 ntBASIC1.93□□□□□ -2.1
PTPN9P43378 AC084364.2-201ENST00000546924 395 ntBASIC1.93□□□□□ -2.1
PTPN9P43378 AC110588.1-201ENST00000559699 137 ntBASIC1.93□□□□□ -2.1
PTPN9P43378 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.93□□□□□ -2.1
PTPN9P43378 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.92□□□□□ -2.1
PTPN9P43378 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.92□□□□□ -2.1
PTPN9P43378 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
PTPN9P43378 RNU6-112P-201ENST00000363599 104 ntBASIC1.92□□□□□ -2.1
PTPN9P43378 SNORA33-201ENST00000363664 130 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 467.9 ms