Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 AL606517.2-201ENST00000442855 241 ntBASIC1.72□□□□□ -2.13
MSH2P43246 RPS27P1-201ENST00000450552 247 ntBASIC1.72□□□□□ -2.13
MSH2P43246 RPS26P55-201ENST00000471178 356 ntBASIC1.72□□□□□ -2.13
MSH2P43246 RNU6-295P-201ENST00000516901 104 ntBASIC1.72□□□□□ -2.13
MSH2P43246 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.72□□□□□ -2.13
MSH2P43246 AC040896.1-201ENST00000613819 479 ntBASIC1.72□□□□□ -2.13
MSH2P43246 AC100821.1-201ENST00000523153 2479 ntBASIC1.72□□□□□ -2.13
MSH2P43246 RNU6-937P-201ENST00000384325 106 ntBASIC1.71□□□□□ -2.14
MSH2P43246 RNU6-360P-201ENST00000390944 104 ntBASIC1.71□□□□□ -2.14
MSH2P43246 MIR1252-201ENST00000408861 65 ntBASIC1.71□□□□□ -2.14
MSH2P43246 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.71□□□□□ -2.14
MSH2P43246 JTBP1-201ENST00000441314 247 ntBASIC1.71□□□□□ -2.14
MSH2P43246 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.71□□□□□ -2.14
MSH2P43246 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
MSH2P43246 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.71□□□□□ -2.14
MSH2P43246 MIR4680-201ENST00000580906 66 ntBASIC1.71□□□□□ -2.14
MSH2P43246 AC073413.2-201ENST00000604332 360 ntBASIC1.71□□□□□ -2.14
MSH2P43246 AC022217.4-201ENST00000604389 163 ntBASIC1.71□□□□□ -2.14
MSH2P43246 AC022140.2-201ENST00000623500 188 ntBASIC1.71□□□□□ -2.14
MSH2P43246 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
MSH2P43246 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.7□□□□□ -2.14
MSH2P43246 SNORA4.2-201ENST00000365313 147 ntBASIC1.7□□□□□ -2.14
MSH2P43246 SNORA33.2-201ENST00000365413 134 ntBASIC1.7□□□□□ -2.14
MSH2P43246 RNU6-117P-201ENST00000365415 107 ntBASIC1.7□□□□□ -2.14
MSH2P43246 Y_RNA.380-201ENST00000365663 111 ntBASIC1.7□□□□□ -2.14
MSH2P43246 U8.13-201ENST00000390842 128 ntBASIC1.7□□□□□ -2.14
MSH2P43246 AC010154.1-201ENST00000425857 269 ntBASIC1.7□□□□□ -2.14
MSH2P43246 FTH1P12-201ENST00000432137 551 ntBASIC1.7□□□□□ -2.14
MSH2P43246 AC005042.3-201ENST00000453230 174 ntBASIC1.7□□□□□ -2.14
MSH2P43246 SNORA70.12-201ENST00000516084 153 ntBASIC1.7□□□□□ -2.14
MSH2P43246 RNU6-436P-201ENST00000516171 114 ntBASIC1.7□□□□□ -2.14
MSH2P43246 RNU6-970P-201ENST00000516312 107 ntBASIC1.7□□□□□ -2.14
MSH2P43246 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.7□□□□□ -2.14
MSH2P43246 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.7□□□□□ -2.14
MSH2P43246 AC104984.5-201ENST00000586878 94 ntBASIC1.7□□□□□ -2.14
MSH2P43246 AC011373.1-201ENST00000607270 237 ntBASIC1.7□□□□□ -2.14
MSH2P43246 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.7□□□□□ -2.14
MSH2P43246 MIR8063-201ENST00000621930 81 ntBASIC1.7□□□□□ -2.14
MSH2P43246 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.7□□□□□ -2.14
MSH2P43246 AC127459.3-201ENST00000624328 466 ntBASIC1.7□□□□□ -2.14
MSH2P43246 AC018630.2-201ENST00000534866 2403 ntBASIC1.69□□□□□ -2.14
MSH2P43246 RNU6-324P-201ENST00000363957 106 ntBASIC1.69□□□□□ -2.14
MSH2P43246 Y_RNA.455-201ENST00000384230 98 ntBASIC1.69□□□□□ -2.14
MSH2P43246 RNU6-505P-201ENST00000384427 107 ntBASIC1.69□□□□□ -2.14
MSH2P43246 RPL21P1-201ENST00000399532 476 ntBASIC1.69□□□□□ -2.14
MSH2P43246 RPL23AP36-201ENST00000413895 458 ntBASIC1.69□□□□□ -2.14
MSH2P43246 snoU13.27-201ENST00000459278 104 ntBASIC1.69□□□□□ -2.14
MSH2P43246 RNU7-94P-201ENST00000459576 63 ntBASIC1.69□□□□□ -2.14
MSH2P43246 RNU6-1278P-201ENST00000516130 107 ntBASIC1.69□□□□□ -2.14
MSH2P43246 RNU6-397P-201ENST00000516226 104 ntBASIC1.69□□□□□ -2.14
MSH2P43246 RNU7-110P-201ENST00000516891 62 ntBASIC1.69□□□□□ -2.14
MSH2P43246 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.69□□□□□ -2.14
MSH2P43246 RPL21P9-201ENST00000556149 474 ntBASIC1.69□□□□□ -2.14
MSH2P43246 AC136932.1-201ENST00000574771 208 ntBASIC1.69□□□□□ -2.14
MSH2P43246 SNORA77B-201ENST00000578179 125 ntBASIC1.69□□□□□ -2.14
MSH2P43246 RAC1P9-201ENST00000604990 392 ntBASIC1.69□□□□□ -2.14
MSH2P43246 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.69□□□□□ -2.14
MSH2P43246 MIR6715A-201ENST00000615929 79 ntBASIC1.69□□□□□ -2.14
MSH2P43246 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
MSH2P43246 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
MSH2P43246 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
MSH2P43246 Y_RNA.183-201ENST00000363882 113 ntBASIC1.68□□□□□ -2.14
MSH2P43246 RNU6-694P-201ENST00000364071 147 ntBASIC1.68□□□□□ -2.14
MSH2P43246 Y_RNA.331-201ENST00000365267 102 ntBASIC1.68□□□□□ -2.14
MSH2P43246 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.68□□□□□ -2.14
MSH2P43246 Y_RNA.527-201ENST00000384573 102 ntBASIC1.68□□□□□ -2.14
MSH2P43246 RNU11-5P-201ENST00000391216 129 ntBASIC1.68□□□□□ -2.14
MSH2P43246 RNU2-61P-201ENST00000411069 191 ntBASIC1.68□□□□□ -2.14
MSH2P43246 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.68□□□□□ -2.14
MSH2P43246 RNU1-98P-201ENST00000458992 160 ntBASIC1.68□□□□□ -2.14
MSH2P43246 RNU6-1046P-201ENST00000516538 107 ntBASIC1.68□□□□□ -2.14
MSH2P43246 RNU6-1137P-201ENST00000517073 99 ntBASIC1.68□□□□□ -2.14
MSH2P43246 MIR4422-201ENST00000581938 83 ntBASIC1.68□□□□□ -2.14
MSH2P43246 AP001485.1-201ENST00000604799 199 ntBASIC1.68□□□□□ -2.14
MSH2P43246 MIR6845-201ENST00000613182 61 ntBASIC1.68□□□□□ -2.14
MSH2P43246 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.68□□□□□ -2.14
MSH2P43246 MIR7843-201ENST00000622274 79 ntBASIC1.68□□□□□ -2.14
MSH2P43246 AC084768.2-201ENST00000622736 221 ntBASIC1.68□□□□□ -2.14
MSH2P43246 MIR6079-201ENST00000635807 62 ntBASIC1.68□□□□□ -2.14
MSH2P43246 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.68□□□□□ -2.14
MSH2P43246 ICE2P2-201ENST00000483823 2787 ntBASIC1.68□□□□□ -2.14
MSH2P43246 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
MSH2P43246 SNORD81.1-201ENST00000363064 77 ntBASIC1.67□□□□□ -2.14
MSH2P43246 RNU6-997P-201ENST00000384725 107 ntBASIC1.67□□□□□ -2.14
MSH2P43246 RNU6-376P-201ENST00000384731 106 ntBASIC1.67□□□□□ -2.14
MSH2P43246 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.67□□□□□ -2.14
MSH2P43246 AC245047.3-201ENST00000429428 127 ntBASIC1.67□□□□□ -2.14
MSH2P43246 HSPE1P13-201ENST00000451143 297 ntBASIC1.67□□□□□ -2.14
MSH2P43246 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.67□□□□□ -2.14
MSH2P43246 SNORA31.10-201ENST00000516482 106 ntBASIC1.67□□□□□ -2.14
MSH2P43246 RNU6-1337P-201ENST00000516525 95 ntBASIC1.67□□□□□ -2.14
MSH2P43246 RNU6-897P-201ENST00000517135 105 ntBASIC1.67□□□□□ -2.14
MSH2P43246 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.67□□□□□ -2.14
MSH2P43246 AC113195.1-201ENST00000579952 141 ntBASIC1.67□□□□□ -2.14
MSH2P43246 MIR8054-201ENST00000620877 86 ntBASIC1.67□□□□□ -2.14
MSH2P43246 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
MSH2P43246 Y_RNA.329-201ENST00000365209 107 ntBASIC1.66□□□□□ -2.14
MSH2P43246 RNU6-639P-201ENST00000384074 107 ntBASIC1.66□□□□□ -2.14
MSH2P43246 RNU6-950P-201ENST00000384651 107 ntBASIC1.66□□□□□ -2.14
MSH2P43246 RNU6-21P-201ENST00000384710 107 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms