Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RNU7-128P-201ENST00000517247 62 ntBASIC1.56□□□□□ -2.16
SOX3P41225 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
SOX3P41225 AC113195.1-201ENST00000579952 141 ntBASIC1.56□□□□□ -2.16
SOX3P41225 MIR4438-201ENST00000585271 93 ntBASIC1.56□□□□□ -2.16
SOX3P41225 RAC1P9-201ENST00000604990 392 ntBASIC1.56□□□□□ -2.16
SOX3P41225 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.56□□□□□ -2.16
SOX3P41225 Y_RNA.143-201ENST00000363520 106 ntBASIC1.55□□□□□ -2.16
SOX3P41225 RNU6-271P-201ENST00000363858 105 ntBASIC1.55□□□□□ -2.16
SOX3P41225 RNU6-1175P-201ENST00000365200 107 ntBASIC1.55□□□□□ -2.16
SOX3P41225 Y_RNA.455-201ENST00000384230 98 ntBASIC1.55□□□□□ -2.16
SOX3P41225 MIR520A-201ENST00000384862 85 ntBASIC1.55□□□□□ -2.16
SOX3P41225 MIR873-201ENST00000401120 77 ntBASIC1.55□□□□□ -2.16
SOX3P41225 RNU6-121P-201ENST00000410525 99 ntBASIC1.55□□□□□ -2.16
SOX3P41225 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.55□□□□□ -2.16
SOX3P41225 EBAG9P1-201ENST00000418955 543 ntBASIC1.55□□□□□ -2.16
SOX3P41225 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.55□□□□□ -2.16
SOX3P41225 AC069257.2-201ENST00000441819 155 ntBASIC1.55□□□□□ -2.16
SOX3P41225 MRPS10P1-201ENST00000448483 130 ntBASIC1.55□□□□□ -2.16
SOX3P41225 RPS26P45-201ENST00000471748 340 ntBASIC1.55□□□□□ -2.16
SOX3P41225 RNA5SP20-201ENST00000515976 84 ntBASIC1.55□□□□□ -2.16
SOX3P41225 AC023157.2-201ENST00000540596 141 ntBASIC1.55□□□□□ -2.16
SOX3P41225 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.55□□□□□ -2.16
SOX3P41225 AL442663.2-201ENST00000554385 511 ntBASIC1.55□□□□□ -2.16
SOX3P41225 AL360085.1-201ENST00000604713 532 ntBASIC1.55□□□□□ -2.16
SOX3P41225 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.55□□□□□ -2.16
SOX3P41225 RNU1-22P-201ENST00000363334 158 ntBASIC1.54□□□□□ -2.16
SOX3P41225 Y_RNA.183-201ENST00000363882 113 ntBASIC1.54□□□□□ -2.16
SOX3P41225 Y_RNA.422-201ENST00000384054 114 ntBASIC1.54□□□□□ -2.16
SOX3P41225 RNU6-639P-201ENST00000384074 107 ntBASIC1.54□□□□□ -2.16
SOX3P41225 RNU6-1160P-201ENST00000384546 104 ntBASIC1.54□□□□□ -2.16
SOX3P41225 RNA5SP323-201ENST00000391094 133 ntBASIC1.54□□□□□ -2.16
SOX3P41225 RNU6-985P-201ENST00000410182 104 ntBASIC1.54□□□□□ -2.16
SOX3P41225 RNU6-1186P-201ENST00000410429 97 ntBASIC1.54□□□□□ -2.16
SOX3P41225 RPL23AP36-201ENST00000413895 458 ntBASIC1.54□□□□□ -2.16
SOX3P41225 AL118496.2-201ENST00000448300 230 ntBASIC1.54□□□□□ -2.16
SOX3P41225 MTATP8P1-201ENST00000467115 207 ntBASIC1.54□□□□□ -2.16
SOX3P41225 RNU6-436P-201ENST00000516171 114 ntBASIC1.54□□□□□ -2.16
SOX3P41225 RNU6-397P-201ENST00000516226 104 ntBASIC1.54□□□□□ -2.16
SOX3P41225 SNORA31.17-201ENST00000516953 127 ntBASIC1.54□□□□□ -2.16
SOX3P41225 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.54□□□□□ -2.16
SOX3P41225 AC136932.1-201ENST00000574771 208 ntBASIC1.54□□□□□ -2.16
SOX3P41225 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.54□□□□□ -2.16
SOX3P41225 MIR4713-201ENST00000582691 75 ntBASIC1.54□□□□□ -2.16
SOX3P41225 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.54□□□□□ -2.16
SOX3P41225 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.54□□□□□ -2.16
SOX3P41225 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.54□□□□□ -2.16
SOX3P41225 SNORA63-201ENST00000363450 132 ntBASIC1.53□□□□□ -2.16
SOX3P41225 RNU6-937P-201ENST00000384325 106 ntBASIC1.53□□□□□ -2.16
SOX3P41225 Y_RNA.512-201ENST00000384518 102 ntBASIC1.53□□□□□ -2.16
SOX3P41225 AL031003.1-201ENST00000404229 172 ntBASIC1.53□□□□□ -2.16
SOX3P41225 ELOCP20-201ENST00000422460 345 ntBASIC1.53□□□□□ -2.16
SOX3P41225 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.53□□□□□ -2.16
SOX3P41225 AC073910.1-201ENST00000445047 438 ntBASIC1.53□□□□□ -2.16
SOX3P41225 AC005042.3-201ENST00000453230 174 ntBASIC1.53□□□□□ -2.16
SOX3P41225 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
SOX3P41225 RNU6-155P-201ENST00000516347 100 ntBASIC1.53□□□□□ -2.16
SOX3P41225 RNU6-764P-201ENST00000516396 105 ntBASIC1.53□□□□□ -2.16
SOX3P41225 RNU6-897P-201ENST00000517135 105 ntBASIC1.53□□□□□ -2.16
SOX3P41225 RNA5SP437-201ENST00000517249 129 ntBASIC1.53□□□□□ -2.16
SOX3P41225 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.53□□□□□ -2.16
SOX3P41225 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.53□□□□□ -2.16
SOX3P41225 MIR4255-201ENST00000579351 72 ntBASIC1.53□□□□□ -2.16
SOX3P41225 AC011373.1-201ENST00000607270 237 ntBASIC1.53□□□□□ -2.16
SOX3P41225 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.53□□□□□ -2.16
SOX3P41225 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.53□□□□□ -2.17
SOX3P41225 Y_RNA.124-201ENST00000363339 93 ntBASIC1.52□□□□□ -2.17
SOX3P41225 Y_RNA.214-201ENST00000364201 112 ntBASIC1.52□□□□□ -2.17
SOX3P41225 RNU6-407P-201ENST00000365280 104 ntBASIC1.52□□□□□ -2.17
SOX3P41225 SNORA17.3-201ENST00000391159 129 ntBASIC1.52□□□□□ -2.17
SOX3P41225 AL590004.1-201ENST00000405321 300 ntBASIC1.52□□□□□ -2.17
SOX3P41225 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.52□□□□□ -2.17
SOX3P41225 MTND2P23-201ENST00000422990 651 ntBASIC1.52□□□□□ -2.17
SOX3P41225 RPS26P55-201ENST00000471178 356 ntBASIC1.52□□□□□ -2.17
SOX3P41225 AC097462.1-201ENST00000514125 324 ntBASIC1.52□□□□□ -2.17
SOX3P41225 SNORA70.12-201ENST00000516084 153 ntBASIC1.52□□□□□ -2.17
SOX3P41225 RNU7-172P-201ENST00000517125 64 ntBASIC1.52□□□□□ -2.17
SOX3P41225 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.52□□□□□ -2.17
SOX3P41225 AL355297.3-201ENST00000604082 446 ntBASIC1.52□□□□□ -2.17
SOX3P41225 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.52□□□□□ -2.17
SOX3P41225 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.52□□□□□ -2.17
SOX3P41225 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
SOX3P41225 SNORD81.1-201ENST00000363064 77 ntBASIC1.51□□□□□ -2.17
SOX3P41225 Y_RNA.140-201ENST00000363474 103 ntBASIC1.51□□□□□ -2.17
SOX3P41225 Y_RNA.222-201ENST00000364264 102 ntBASIC1.51□□□□□ -2.17
SOX3P41225 RNU6-117P-201ENST00000365415 107 ntBASIC1.51□□□□□ -2.17
SOX3P41225 RNU6-360P-201ENST00000390944 104 ntBASIC1.51□□□□□ -2.17
SOX3P41225 SNORD115-46-201ENST00000390982 71 ntBASIC1.51□□□□□ -2.17
SOX3P41225 RPL21P1-201ENST00000399532 476 ntBASIC1.51□□□□□ -2.17
SOX3P41225 MIR548F4-201ENST00000408515 105 ntBASIC1.51□□□□□ -2.17
SOX3P41225 RNU2-7P-201ENST00000410794 178 ntBASIC1.51□□□□□ -2.17
SOX3P41225 RNU2-61P-201ENST00000411069 191 ntBASIC1.51□□□□□ -2.17
SOX3P41225 AC010154.1-201ENST00000425857 269 ntBASIC1.51□□□□□ -2.17
SOX3P41225 HSPE1P9-201ENST00000440046 311 ntBASIC1.51□□□□□ -2.17
SOX3P41225 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.51□□□□□ -2.17
SOX3P41225 RPS27P1-201ENST00000450552 247 ntBASIC1.51□□□□□ -2.17
SOX3P41225 AC098869.1-201ENST00000481627 292 ntBASIC1.51□□□□□ -2.17
SOX3P41225 RNA5SP481-201ENST00000516814 122 ntBASIC1.51□□□□□ -2.17
SOX3P41225 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.51□□□□□ -2.17
SOX3P41225 AC131281.1-201ENST00000522984 164 ntBASIC1.51□□□□□ -2.17
SOX3P41225 CBX3P4-201ENST00000538909 354 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms