Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.33□□□□□ -1.88
LIG1P18858 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
LIG1P18858 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.32□□□□□ -1.88
LIG1P18858 RNU6-1240P-201ENST00000365155 104 ntBASIC3.32□□□□□ -1.88
LIG1P18858 Y_RNA.432-201ENST00000384087 111 ntBASIC3.32□□□□□ -1.88
LIG1P18858 HMGN2P35-201ENST00000412164 270 ntBASIC3.32□□□□□ -1.88
LIG1P18858 RPL30P4-201ENST00000429309 333 ntBASIC3.32□□□□□ -1.88
LIG1P18858 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3.32□□□□□ -1.88
LIG1P18858 RNU7-107P-201ENST00000459121 61 ntBASIC3.32□□□□□ -1.88
LIG1P18858 RNU2-34P-201ENST00000516534 121 ntBASIC3.32□□□□□ -1.88
LIG1P18858 AC027419.1-201ENST00000522976 328 ntBASIC3.32□□□□□ -1.88
LIG1P18858 MIR5194-201ENST00000582634 120 ntBASIC3.32□□□□□ -1.88
LIG1P18858 AL356280.1-201ENST00000603614 379 ntBASIC3.32□□□□□ -1.88
LIG1P18858 AC006386.2-201ENST00000624491 75 ntBASIC3.32□□□□□ -1.88
LIG1P18858 AC012005.1-201ENST00000624575 75 ntBASIC3.32□□□□□ -1.88
LIG1P18858 AL137790.1-201ENST00000634283 177 ntBASIC3.32□□□□□ -1.88
LIG1P18858 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
LIG1P18858 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.32□□□□□ -1.88
LIG1P18858 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
LIG1P18858 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
LIG1P18858 RNU4-13P-201ENST00000364019 141 ntBASIC3.31□□□□□ -1.88
LIG1P18858 SNORA25.7-201ENST00000364375 127 ntBASIC3.31□□□□□ -1.88
LIG1P18858 RNU6-418P-201ENST00000384035 107 ntBASIC3.31□□□□□ -1.88
LIG1P18858 RNU6-1064P-201ENST00000410626 104 ntBASIC3.31□□□□□ -1.88
LIG1P18858 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.31□□□□□ -1.88
LIG1P18858 SCGB1D5P-201ENST00000515134 247 ntBASIC3.31□□□□□ -1.88
LIG1P18858 RNU6-1299P-201ENST00000516316 100 ntBASIC3.31□□□□□ -1.88
LIG1P18858 RNU6-826P-201ENST00000516827 104 ntBASIC3.31□□□□□ -1.88
LIG1P18858 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
LIG1P18858 AL161431.1-201ENST00000618966 4205 ntBASIC3.3□□□□□ -1.88
LIG1P18858 RNU6-438P-201ENST00000365561 103 ntBASIC3.3□□□□□ -1.88
LIG1P18858 AC016909.1-201ENST00000415916 166 ntBASIC3.3□□□□□ -1.88
LIG1P18858 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.3□□□□□ -1.88
LIG1P18858 RNA5SP153-201ENST00000516498 76 ntBASIC3.3□□□□□ -1.88
LIG1P18858 Y_RNA.757-201ENST00000578934 114 ntBASIC3.3□□□□□ -1.88
LIG1P18858 MIR2681-201ENST00000581814 105 ntBASIC3.3□□□□□ -1.88
LIG1P18858 AC023043.3-201ENST00000593113 385 ntBASIC3.3□□□□□ -1.88
LIG1P18858 AC090115.4-201ENST00000609970 188 ntBASIC3.3□□□□□ -1.88
LIG1P18858 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
LIG1P18858 RNU6-1080P-201ENST00000383982 107 ntBASIC3.29□□□□□ -1.88
LIG1P18858 U6atac.2-201ENST00000408644 118 ntBASIC3.29□□□□□ -1.88
LIG1P18858 CYCSP49-201ENST00000420810 319 ntBASIC3.29□□□□□ -1.88
LIG1P18858 AC063976.3-201ENST00000426849 329 ntBASIC3.29□□□□□ -1.88
LIG1P18858 SUMO1P4-201ENST00000429430 302 ntBASIC3.29□□□□□ -1.88
LIG1P18858 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.29□□□□□ -1.88
LIG1P18858 RNU7-26P-201ENST00000458980 63 ntBASIC3.29□□□□□ -1.88
LIG1P18858 S100A11P2-201ENST00000467589 312 ntBASIC3.29□□□□□ -1.88
LIG1P18858 YWHAEP4-201ENST00000505390 198 ntBASIC3.29□□□□□ -1.88
LIG1P18858 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.29□□□□□ -1.88
LIG1P18858 AL049861.1-201ENST00000603130 150 ntBASIC3.29□□□□□ -1.88
LIG1P18858 AC013412.1-201ENST00000610687 192 ntBASIC3.29□□□□□ -1.88
LIG1P18858 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
LIG1P18858 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.29□□□□□ -1.88
LIG1P18858 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.29□□□□□ -1.88
LIG1P18858 SNORA44-201ENST00000384584 132 ntBASIC3.28□□□□□ -1.88
LIG1P18858 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC3.28□□□□□ -1.88
LIG1P18858 AL158823.1-201ENST00000418441 478 ntBASIC3.28□□□□□ -1.88
LIG1P18858 AC245102.2-201ENST00000448956 180 ntBASIC3.28□□□□□ -1.88
LIG1P18858 HMGN2P18-201ENST00000450680 270 ntBASIC3.28□□□□□ -1.88
LIG1P18858 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC3.28□□□□□ -1.88
LIG1P18858 RPS27P22-201ENST00000478056 241 ntBASIC3.28□□□□□ -1.88
LIG1P18858 AL929325.1-201ENST00000603096 117 ntBASIC3.28□□□□□ -1.88
LIG1P18858 AC097639.2-201ENST00000603159 172 ntBASIC3.28□□□□□ -1.88
LIG1P18858 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.28□□□□□ -1.88
LIG1P18858 uc_338.4-201ENST00000616635 176 ntBASIC3.28□□□□□ -1.88
LIG1P18858 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.27□□□□□ -1.89
LIG1P18858 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
LIG1P18858 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.27□□□□□ -1.89
LIG1P18858 Y_RNA.120-201ENST00000363304 110 ntBASIC3.27□□□□□ -1.89
LIG1P18858 RNU1-22P-201ENST00000363334 158 ntBASIC3.27□□□□□ -1.89
LIG1P18858 SNORA38-201ENST00000363946 132 ntBASIC3.27□□□□□ -1.89
LIG1P18858 Y_RNA.203-201ENST00000364106 102 ntBASIC3.27□□□□□ -1.89
LIG1P18858 Y_RNA.280-201ENST00000364765 112 ntBASIC3.27□□□□□ -1.89
LIG1P18858 RNU6-1144P-201ENST00000384247 104 ntBASIC3.27□□□□□ -1.89
LIG1P18858 Y_RNA.525-201ENST00000384570 113 ntBASIC3.27□□□□□ -1.89
LIG1P18858 RNU6-429P-201ENST00000384582 108 ntBASIC3.27□□□□□ -1.89
LIG1P18858 RNU6-476P-201ENST00000384726 107 ntBASIC3.27□□□□□ -1.89
LIG1P18858 MIR512-1-201ENST00000384913 84 ntBASIC3.27□□□□□ -1.89
LIG1P18858 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
LIG1P18858 NDUFB4P4-201ENST00000404822 243 ntBASIC3.27□□□□□ -1.89
LIG1P18858 SNORD88.1-201ENST00000408684 91 ntBASIC3.27□□□□□ -1.89
LIG1P18858 EEF1A1P41-201ENST00000414667 207 ntBASIC3.27□□□□□ -1.89
LIG1P18858 AC025750.2-201ENST00000442609 450 ntBASIC3.27□□□□□ -1.89
LIG1P18858 EEF1B2P7-201ENST00000451177 676 ntBASIC3.27□□□□□ -1.89
LIG1P18858 AC090515.1-201ENST00000465295 476 ntBASIC3.27□□□□□ -1.89
LIG1P18858 SNORD77.4-201ENST00000516158 81 ntBASIC3.27□□□□□ -1.89
LIG1P18858 Y_RNA.692-201ENST00000516627 105 ntBASIC3.27□□□□□ -1.89
LIG1P18858 CYCSP26-201ENST00000534107 320 ntBASIC3.27□□□□□ -1.89
LIG1P18858 MIR1248-201ENST00000629190 106 ntBASIC3.27□□□□□ -1.89
LIG1P18858 MIR7157-201ENST00000635801 60 ntBASIC3.27□□□□□ -1.89
LIG1P18858 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
LIG1P18858 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
LIG1P18858 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.26□□□□□ -1.89
LIG1P18858 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.26□□□□□ -1.89
LIG1P18858 Y_RNA.294-201ENST00000364916 102 ntBASIC3.26□□□□□ -1.89
LIG1P18858 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC3.26□□□□□ -1.89
LIG1P18858 RNU6-1072P-201ENST00000384703 107 ntBASIC3.26□□□□□ -1.89
LIG1P18858 RNU6-443P-201ENST00000384780 107 ntBASIC3.26□□□□□ -1.89
LIG1P18858 RNY4P18-201ENST00000391107 89 ntBASIC3.26□□□□□ -1.89
LIG1P18858 COTL1P1-201ENST00000422309 375 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms