Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL117336.2-201ENST00000602435 335 ntBASIC1.85□□□□□ -2.11
HMGB1P09429 BX248123.2-201ENST00000606318 124 ntBASIC1.85□□□□□ -2.11
HMGB1P09429 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.85□□□□□ -2.11
HMGB1P09429 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
HMGB1P09429 RNU6-490P-201ENST00000362985 107 ntBASIC1.84□□□□□ -2.11
HMGB1P09429 SNORA2.2-201ENST00000365473 135 ntBASIC1.84□□□□□ -2.11
HMGB1P09429 MIR653-201ENST00000385279 96 ntBASIC1.84□□□□□ -2.11
HMGB1P09429 Z98949.2-201ENST00000440996 144 ntBASIC1.84□□□□□ -2.11
HMGB1P09429 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.84□□□□□ -2.11
HMGB1P09429 RNU6-699P-201ENST00000517081 110 ntBASIC1.84□□□□□ -2.11
HMGB1P09429 SNORA70.22-201ENST00000517160 124 ntBASIC1.84□□□□□ -2.11
HMGB1P09429 MIR4659A-201ENST00000580269 81 ntBASIC1.84□□□□□ -2.11
HMGB1P09429 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.84□□□□□ -2.11
HMGB1P09429 AP000648.3-201ENST00000623539 4507 ntBASIC1.83□□□□□ -2.12
HMGB1P09429 RNU6-1080P-201ENST00000383982 107 ntBASIC1.83□□□□□ -2.12
HMGB1P09429 MIR517C-201ENST00000385103 95 ntBASIC1.83□□□□□ -2.12
HMGB1P09429 RNY4P36-201ENST00000391116 96 ntBASIC1.83□□□□□ -2.12
HMGB1P09429 RNU2-54P-201ENST00000410299 190 ntBASIC1.83□□□□□ -2.12
HMGB1P09429 RNU6-155P-201ENST00000516347 100 ntBASIC1.83□□□□□ -2.12
HMGB1P09429 AL358944.1-201ENST00000528537 144 ntBASIC1.83□□□□□ -2.12
HMGB1P09429 AC015720.1-201ENST00000565251 277 ntBASIC1.83□□□□□ -2.12
HMGB1P09429 UBE2V2P2-201ENST00000587677 504 ntBASIC1.83□□□□□ -2.12
HMGB1P09429 AC084781.2-201ENST00000615568 161 ntBASIC1.83□□□□□ -2.12
HMGB1P09429 RNA5SP363-201ENST00000365072 115 ntBASIC1.82□□□□□ -2.12
HMGB1P09429 RNA5SP190-201ENST00000365222 118 ntBASIC1.82□□□□□ -2.12
HMGB1P09429 RNU6-163P-201ENST00000384396 106 ntBASIC1.82□□□□□ -2.12
HMGB1P09429 SNORD41-201ENST00000386967 70 ntBASIC1.82□□□□□ -2.12
HMGB1P09429 AC048334.1-201ENST00000477975 159 ntBASIC1.82□□□□□ -2.12
HMGB1P09429 AC240442.1-201ENST00000616055 283 ntBASIC1.82□□□□□ -2.12
HMGB1P09429 RNU6-708P-201ENST00000384217 107 ntBASIC1.81□□□□□ -2.12
HMGB1P09429 MIR559-201ENST00000385188 96 ntBASIC1.81□□□□□ -2.12
HMGB1P09429 PIGPP3-201ENST00000425307 415 ntBASIC1.81□□□□□ -2.12
HMGB1P09429 AL162725.1-201ENST00000435405 301 ntBASIC1.81□□□□□ -2.12
HMGB1P09429 RPS4XP11-201ENST00000446897 772 ntBASIC1.81□□□□□ -2.12
HMGB1P09429 RPL39P39-201ENST00000455840 151 ntBASIC1.81□□□□□ -2.12
HMGB1P09429 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.81□□□□□ -2.12
HMGB1P09429 SNORA31.4-201ENST00000516049 129 ntBASIC1.81□□□□□ -2.12
HMGB1P09429 RNU6-277P-201ENST00000516272 106 ntBASIC1.81□□□□□ -2.12
HMGB1P09429 RNA5SP404-201ENST00000517118 132 ntBASIC1.81□□□□□ -2.12
HMGB1P09429 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
HMGB1P09429 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
HMGB1P09429 ZNF72P-201ENST00000425869 1908 ntBASIC1.8□□□□□ -2.12
HMGB1P09429 MIRLET7C-201ENST00000362160 84 ntBASIC1.8□□□□□ -2.12
HMGB1P09429 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
HMGB1P09429 RNU6-910P-201ENST00000390844 107 ntBASIC1.8□□□□□ -2.12
HMGB1P09429 SNORA67.5-201ENST00000391036 107 ntBASIC1.8□□□□□ -2.12
HMGB1P09429 MIR891A-201ENST00000401237 79 ntBASIC1.8□□□□□ -2.12
HMGB1P09429 RNU6-1012P-201ENST00000516606 109 ntBASIC1.8□□□□□ -2.12
HMGB1P09429 Y_RNA.718-201ENST00000517110 102 ntBASIC1.8□□□□□ -2.12
HMGB1P09429 SNORA72.1-201ENST00000363485 129 ntBASIC1.79□□□□□ -2.12
HMGB1P09429 SNORD116-29-201ENST00000384516 83 ntBASIC1.79□□□□□ -2.12
HMGB1P09429 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
HMGB1P09429 AC006600.1-201ENST00000572529 153 ntBASIC1.79□□□□□ -2.12
HMGB1P09429 SNORD53B-201ENST00000577887 78 ntBASIC1.79□□□□□ -2.12
HMGB1P09429 FAM106DP-201ENST00000586416 501 ntBASIC1.79□□□□□ -2.12
HMGB1P09429 AL357312.1-201ENST00000603879 298 ntBASIC1.79□□□□□ -2.12
HMGB1P09429 RNU6-1040P-201ENST00000383974 107 ntBASIC1.78□□□□□ -2.12
HMGB1P09429 Y_RNA.446-201ENST00000384178 104 ntBASIC1.78□□□□□ -2.12
HMGB1P09429 SNORD116-13-201ENST00000384408 92 ntBASIC1.78□□□□□ -2.12
HMGB1P09429 RNU6-1105P-201ENST00000384774 107 ntBASIC1.78□□□□□ -2.12
HMGB1P09429 MIR1304-201ENST00000408243 91 ntBASIC1.78□□□□□ -2.12
HMGB1P09429 AC023790.1-201ENST00000482174 347 ntBASIC1.78□□□□□ -2.12
HMGB1P09429 AL163540.1-201ENST00000485382 386 ntBASIC1.78□□□□□ -2.12
HMGB1P09429 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.78□□□□□ -2.12
HMGB1P09429 AC120024.3-201ENST00000603167 156 ntBASIC1.78□□□□□ -2.12
HMGB1P09429 AC027335.2-201ENST00000624030 375 ntBASIC1.78□□□□□ -2.12
HMGB1P09429 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
HMGB1P09429 RNU6-1283P-201ENST00000365314 105 ntBASIC1.77□□□□□ -2.13
HMGB1P09429 Y_RNA.361-201ENST00000365515 120 ntBASIC1.77□□□□□ -2.13
HMGB1P09429 Y_RNA.428-201ENST00000384078 102 ntBASIC1.77□□□□□ -2.13
HMGB1P09429 MIR320A-201ENST00000385302 82 ntBASIC1.77□□□□□ -2.13
HMGB1P09429 MTCO2P27-201ENST00000420740 428 ntBASIC1.77□□□□□ -2.13
HMGB1P09429 Y_RNA.675-201ENST00000516389 149 ntBASIC1.77□□□□□ -2.13
HMGB1P09429 RNU6-548P-201ENST00000517083 115 ntBASIC1.77□□□□□ -2.13
HMGB1P09429 AL132765.2-201ENST00000610812 351 ntBASIC1.77□□□□□ -2.13
HMGB1P09429 U6.92-201ENST00000636464 89 ntBASIC1.77□□□□□ -2.13
HMGB1P09429 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.77□□□□□ -2.13
HMGB1P09429 SNORA67.6-201ENST00000391093 99 ntBASIC1.76□□□□□ -2.13
HMGB1P09429 SNORD13-201ENST00000459299 104 ntBASIC1.76□□□□□ -2.13
HMGB1P09429 CYCTP-201ENST00000504253 315 ntBASIC1.76□□□□□ -2.13
HMGB1P09429 RNU6-911P-201ENST00000516523 104 ntBASIC1.76□□□□□ -2.13
HMGB1P09429 SNORD116.3-201ENST00000517176 78 ntBASIC1.76□□□□□ -2.13
HMGB1P09429 SNORA31.24-201ENST00000517232 57 ntBASIC1.76□□□□□ -2.13
HMGB1P09429 AC011604.1-201ENST00000545978 196 ntBASIC1.76□□□□□ -2.13
HMGB1P09429 AL355375.2-201ENST00000574825 175 ntBASIC1.76□□□□□ -2.13
HMGB1P09429 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.76□□□□□ -2.13
HMGB1P09429 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.76□□□□□ -2.13
HMGB1P09429 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
HMGB1P09429 Y_RNA.27-201ENST00000362540 103 ntBASIC1.75□□□□□ -2.13
HMGB1P09429 RNU6-60P-201ENST00000364792 103 ntBASIC1.75□□□□□ -2.13
HMGB1P09429 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.75□□□□□ -2.13
HMGB1P09429 MLLT10P1-201ENST00000418346 262 ntBASIC1.75□□□□□ -2.13
HMGB1P09429 AC093019.1-201ENST00000443135 252 ntBASIC1.75□□□□□ -2.13
HMGB1P09429 CHEK2P4-201ENST00000450340 246 ntBASIC1.75□□□□□ -2.13
HMGB1P09429 LINC01399-202ENST00000458450 244 ntBASIC1.75□□□□□ -2.13
HMGB1P09429 VN1R91P-201ENST00000594377 169 ntBASIC1.75□□□□□ -2.13
HMGB1P09429 AC138305.3-201ENST00000624988 240 ntBASIC1.75□□□□□ -2.13
HMGB1P09429 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
HMGB1P09429 RNU4-79P-201ENST00000362764 141 ntBASIC1.74□□□□□ -2.13
HMGB1P09429 MIR1323-201ENST00000408090 73 ntBASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 142.6 ms