Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC007012.1-201ENST00000567192 175 ntBASIC3.51□□□□□ -1.85
USP3Q9Y6I4 MIR3199-1-201ENST00000582434 88 ntBASIC3.51□□□□□ -1.85
USP3Q9Y6I4 MIR4276-201ENST00000584832 70 ntBASIC3.51□□□□□ -1.85
USP3Q9Y6I4 AL359075.3-201ENST00000613288 217 ntBASIC3.51□□□□□ -1.85
USP3Q9Y6I4 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.51□□□□□ -1.85
USP3Q9Y6I4 U7.8-201ENST00000619968 63 ntBASIC3.51□□□□□ -1.85
USP3Q9Y6I4 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
USP3Q9Y6I4 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
USP3Q9Y6I4 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
USP3Q9Y6I4 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
USP3Q9Y6I4 TNPO1P3-201ENST00000436471 2662 ntBASIC3.5□□□□□ -1.85
USP3Q9Y6I4 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP3Q9Y6I4 Y_RNA.85-201ENST00000363014 111 ntBASIC3.5□□□□□ -1.85
USP3Q9Y6I4 RNU6-1107P-201ENST00000364817 104 ntBASIC3.5□□□□□ -1.85
USP3Q9Y6I4 SNORD61-201ENST00000384252 73 ntBASIC3.5□□□□□ -1.85
USP3Q9Y6I4 RN7SKP284-201ENST00000411002 343 ntBASIC3.5□□□□□ -1.85
USP3Q9Y6I4 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.5□□□□□ -1.85
USP3Q9Y6I4 AC010401.1-201ENST00000463867 348 ntBASIC3.5□□□□□ -1.85
USP3Q9Y6I4 IGKV1-22-201ENST00000524313 326 ntBASIC3.5□□□□□ -1.85
USP3Q9Y6I4 AL353149.1-201ENST00000610667 244 ntBASIC3.5□□□□□ -1.85
USP3Q9Y6I4 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.5□□□□□ -1.85
USP3Q9Y6I4 AL137067.1-201ENST00000615933 120 ntBASIC3.5□□□□□ -1.85
USP3Q9Y6I4 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
USP3Q9Y6I4 MIR515-2-201ENST00000384883 83 ntBASIC3.49□□□□□ -1.85
USP3Q9Y6I4 MIR515-1-201ENST00000384884 83 ntBASIC3.49□□□□□ -1.85
USP3Q9Y6I4 RNU6-1186P-201ENST00000410429 97 ntBASIC3.49□□□□□ -1.85
USP3Q9Y6I4 RNU2-63P-201ENST00000410792 194 ntBASIC3.49□□□□□ -1.85
USP3Q9Y6I4 AC060773.1-201ENST00000421698 310 ntBASIC3.49□□□□□ -1.85
USP3Q9Y6I4 CALM2P4-201ENST00000430810 426 ntBASIC3.49□□□□□ -1.85
USP3Q9Y6I4 RN7SL807P-201ENST00000470923 297 ntBASIC3.49□□□□□ -1.85
USP3Q9Y6I4 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.49□□□□□ -1.85
USP3Q9Y6I4 AC011406.1-201ENST00000512440 370 ntBASIC3.49□□□□□ -1.85
USP3Q9Y6I4 MIR7515-201ENST00000637837 67 ntBASIC3.49□□□□□ -1.85
USP3Q9Y6I4 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
USP3Q9Y6I4 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.49□□□□□ -1.85
USP3Q9Y6I4 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.49□□□□□ -1.85
USP3Q9Y6I4 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USP3Q9Y6I4 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.48□□□□□ -1.85
USP3Q9Y6I4 RNU6-766P-201ENST00000362478 107 ntBASIC3.48□□□□□ -1.85
USP3Q9Y6I4 SNORA68.1-201ENST00000364537 132 ntBASIC3.48□□□□□ -1.85
USP3Q9Y6I4 MIR218-1-201ENST00000384999 110 ntBASIC3.48□□□□□ -1.85
USP3Q9Y6I4 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.48□□□□□ -1.85
USP3Q9Y6I4 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC3.48□□□□□ -1.85
USP3Q9Y6I4 RNU7-94P-201ENST00000459576 63 ntBASIC3.48□□□□□ -1.85
USP3Q9Y6I4 AC096725.1-201ENST00000514266 313 ntBASIC3.48□□□□□ -1.85
USP3Q9Y6I4 RNU6-1149P-201ENST00000516810 97 ntBASIC3.48□□□□□ -1.85
USP3Q9Y6I4 RNU6-1270P-201ENST00000517128 108 ntBASIC3.48□□□□□ -1.85
USP3Q9Y6I4 YPEL5P2-201ENST00000605553 359 ntBASIC3.48□□□□□ -1.85
USP3Q9Y6I4 MIR8058-201ENST00000615737 89 ntBASIC3.48□□□□□ -1.85
USP3Q9Y6I4 MIR6079-201ENST00000635807 62 ntBASIC3.48□□□□□ -1.85
USP3Q9Y6I4 AC093908.1-201ENST00000623125 8092 ntBASIC3.48□□□□□ -1.85
USP3Q9Y6I4 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USP3Q9Y6I4 ZNF271P-202ENST00000465539 1970 ntBASIC3.47□□□□□ -1.85
USP3Q9Y6I4 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
USP3Q9Y6I4 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
USP3Q9Y6I4 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
USP3Q9Y6I4 RNU1-70P-201ENST00000362618 164 ntBASIC3.47□□□□□ -1.85
USP3Q9Y6I4 Y_RNA.49-201ENST00000362714 112 ntBASIC3.47□□□□□ -1.85
USP3Q9Y6I4 RNU6-743P-201ENST00000364151 106 ntBASIC3.47□□□□□ -1.85
USP3Q9Y6I4 Y_RNA.410-201ENST00000383992 113 ntBASIC3.47□□□□□ -1.85
USP3Q9Y6I4 SNORD12C-201ENST00000386307 89 ntBASIC3.47□□□□□ -1.85
USP3Q9Y6I4 MIR1302-5-201ENST00000408164 150 ntBASIC3.47□□□□□ -1.85
USP3Q9Y6I4 RNU6-1328P-201ENST00000410938 106 ntBASIC3.47□□□□□ -1.85
USP3Q9Y6I4 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC3.47□□□□□ -1.85
USP3Q9Y6I4 AC244505.4-201ENST00000434905 287 ntBASIC3.47□□□□□ -1.85
USP3Q9Y6I4 SSXP5-201ENST00000443473 287 ntBASIC3.47□□□□□ -1.85
USP3Q9Y6I4 AC233266.1-201ENST00000454518 96 ntBASIC3.47□□□□□ -1.85
USP3Q9Y6I4 RNU6-693P-201ENST00000516134 107 ntBASIC3.47□□□□□ -1.85
USP3Q9Y6I4 RNU6-991P-201ENST00000516168 107 ntBASIC3.47□□□□□ -1.85
USP3Q9Y6I4 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.47□□□□□ -1.85
USP3Q9Y6I4 MIR5047-201ENST00000579212 100 ntBASIC3.47□□□□□ -1.85
USP3Q9Y6I4 AC242852.1-201ENST00000612151 96 ntBASIC3.47□□□□□ -1.85
USP3Q9Y6I4 MIR7112-201ENST00000616126 65 ntBASIC3.47□□□□□ -1.85
USP3Q9Y6I4 AC244015.1-201ENST00000622301 99 ntBASIC3.47□□□□□ -1.85
USP3Q9Y6I4 U6.98-201ENST00000637157 84 ntBASIC3.47□□□□□ -1.85
USP3Q9Y6I4 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
USP3Q9Y6I4 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
USP3Q9Y6I4 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.46□□□□□ -1.86
USP3Q9Y6I4 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.46□□□□□ -1.86
USP3Q9Y6I4 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
USP3Q9Y6I4 RNU6-1113P-201ENST00000384348 107 ntBASIC3.46□□□□□ -1.86
USP3Q9Y6I4 RNU6-554P-201ENST00000410466 106 ntBASIC3.46□□□□□ -1.86
USP3Q9Y6I4 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.46□□□□□ -1.86
USP3Q9Y6I4 RPS26P48-201ENST00000491713 339 ntBASIC3.46□□□□□ -1.86
USP3Q9Y6I4 SCARNA15-202ENST00000516881 127 ntBASIC3.46□□□□□ -1.86
USP3Q9Y6I4 RNU7-128P-201ENST00000517247 62 ntBASIC3.46□□□□□ -1.86
USP3Q9Y6I4 AC068657.1-201ENST00000520807 306 ntBASIC3.46□□□□□ -1.86
USP3Q9Y6I4 MIR5197-201ENST00000583721 112 ntBASIC3.46□□□□□ -1.86
USP3Q9Y6I4 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.46□□□□□ -1.86
USP3Q9Y6I4 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
USP3Q9Y6I4 MIR340-201ENST00000362125 95 ntBASIC3.45□□□□□ -1.86
USP3Q9Y6I4 Y_RNA.163-201ENST00000363702 113 ntBASIC3.45□□□□□ -1.86
USP3Q9Y6I4 MIR561-201ENST00000385216 97 ntBASIC3.45□□□□□ -1.86
USP3Q9Y6I4 MIR802-201ENST00000390235 94 ntBASIC3.45□□□□□ -1.86
USP3Q9Y6I4 SNORA12.1-201ENST00000390873 148 ntBASIC3.45□□□□□ -1.86
USP3Q9Y6I4 SNORD72-201ENST00000390994 80 ntBASIC3.45□□□□□ -1.86
USP3Q9Y6I4 SNORD77.3-201ENST00000391113 65 ntBASIC3.45□□□□□ -1.86
USP3Q9Y6I4 RNA5SP229-201ENST00000410809 99 ntBASIC3.45□□□□□ -1.86
USP3Q9Y6I4 ARF4P2-201ENST00000430209 526 ntBASIC3.45□□□□□ -1.86
USP3Q9Y6I4 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms