Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC9Q9Y3X0 AC010615.1-201ENST00000594254 1764 ntBASIC3.2□□□□□ -1.9
CCDC9Q9Y3X0 SNORD113-8-201ENST00000363497 74 ntBASIC3.19□□□□□ -1.9
CCDC9Q9Y3X0 Y_RNA.214-201ENST00000364201 112 ntBASIC3.19□□□□□ -1.9
CCDC9Q9Y3X0 Y_RNA.602-201ENST00000410535 92 ntBASIC3.19□□□□□ -1.9
CCDC9Q9Y3X0 Y_RNA.618-201ENST00000410949 107 ntBASIC3.19□□□□□ -1.9
CCDC9Q9Y3X0 AC009310.1-201ENST00000414414 451 ntBASIC3.19□□□□□ -1.9
CCDC9Q9Y3X0 ELOCP20-201ENST00000422460 345 ntBASIC3.19□□□□□ -1.9
CCDC9Q9Y3X0 AL731563.1-201ENST00000442202 214 ntBASIC3.19□□□□□ -1.9
CCDC9Q9Y3X0 RPL23AP6-201ENST00000446637 472 ntBASIC3.19□□□□□ -1.9
CCDC9Q9Y3X0 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC9Q9Y3X0 RPS26P55-201ENST00000471178 356 ntBASIC3.19□□□□□ -1.9
CCDC9Q9Y3X0 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC9Q9Y3X0 RNU6-1053P-201ENST00000515930 101 ntBASIC3.19□□□□□ -1.9
CCDC9Q9Y3X0 RNU7-99P-201ENST00000516271 62 ntBASIC3.19□□□□□ -1.9
CCDC9Q9Y3X0 RNU7-172P-201ENST00000517125 64 ntBASIC3.19□□□□□ -1.9
CCDC9Q9Y3X0 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC9Q9Y3X0 AC084364.2-201ENST00000546924 395 ntBASIC3.19□□□□□ -1.9
CCDC9Q9Y3X0 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC3.19□□□□□ -1.9
CCDC9Q9Y3X0 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
CCDC9Q9Y3X0 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
CCDC9Q9Y3X0 AL596028.1-201ENST00000326971 197 ntBASIC3.18□□□□□ -1.9
CCDC9Q9Y3X0 Y_RNA.124-201ENST00000363339 93 ntBASIC3.18□□□□□ -1.9
CCDC9Q9Y3X0 SNORA64-201ENST00000384674 134 ntBASIC3.18□□□□□ -1.9
CCDC9Q9Y3X0 MIR520A-201ENST00000384862 85 ntBASIC3.18□□□□□ -1.9
CCDC9Q9Y3X0 MT-TG-201ENST00000387429 68 ntBASIC3.18□□□□□ -1.9
CCDC9Q9Y3X0 SNORD115-46-201ENST00000390982 71 ntBASIC3.18□□□□□ -1.9
CCDC9Q9Y3X0 MIR548F4-201ENST00000408515 105 ntBASIC3.18□□□□□ -1.9
CCDC9Q9Y3X0 EBAG9P1-201ENST00000418955 543 ntBASIC3.18□□□□□ -1.9
CCDC9Q9Y3X0 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC9Q9Y3X0 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC9Q9Y3X0 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC3.18□□□□□ -1.9
CCDC9Q9Y3X0 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC9Q9Y3X0 RPL21P9-201ENST00000556149 474 ntBASIC3.18□□□□□ -1.9
CCDC9Q9Y3X0 MIR6840-201ENST00000611937 71 ntBASIC3.18□□□□□ -1.9
CCDC9Q9Y3X0 AL442067.1-201ENST00000613261 223 ntBASIC3.18□□□□□ -1.9
CCDC9Q9Y3X0 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC9Q9Y3X0 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC9Q9Y3X0 Y_RNA.149-201ENST00000363558 117 ntBASIC3.17□□□□□ -1.9
CCDC9Q9Y3X0 Y_RNA.193-201ENST00000363979 102 ntBASIC3.17□□□□□ -1.9
CCDC9Q9Y3X0 RNU6-505P-201ENST00000384427 107 ntBASIC3.17□□□□□ -1.9
CCDC9Q9Y3X0 MT-TR-201ENST00000387439 65 ntBASIC3.17□□□□□ -1.9
CCDC9Q9Y3X0 MIR1302-3-201ENST00000408128 138 ntBASIC3.17□□□□□ -1.9
CCDC9Q9Y3X0 AC244636.1-201ENST00000421152 228 ntBASIC3.17□□□□□ -1.9
CCDC9Q9Y3X0 AC024067.1-201ENST00000426199 223 ntBASIC3.17□□□□□ -1.9
CCDC9Q9Y3X0 HMGB3P17-201ENST00000504195 649 ntBASIC3.17□□□□□ -1.9
CCDC9Q9Y3X0 RNU6-1278P-201ENST00000516130 107 ntBASIC3.17□□□□□ -1.9
CCDC9Q9Y3X0 RNU6-436P-201ENST00000516171 114 ntBASIC3.17□□□□□ -1.9
CCDC9Q9Y3X0 RNU6-966P-201ENST00000516479 104 ntBASIC3.17□□□□□ -1.9
CCDC9Q9Y3X0 AC008269.2-201ENST00000561915 1105 ntBASIC3.17□□□□□ -1.9
CCDC9Q9Y3X0 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC3.17□□□□□ -1.9
CCDC9Q9Y3X0 AL773524.1-201ENST00000614065 229 ntBASIC3.17□□□□□ -1.9
CCDC9Q9Y3X0 U4.1-201ENST00000620349 87 ntBASIC3.17□□□□□ -1.9
CCDC9Q9Y3X0 MIR1291-201ENST00000627649 87 ntBASIC3.17□□□□□ -1.9
CCDC9Q9Y3X0 RNU1-22P-201ENST00000363334 158 ntBASIC3.16□□□□□ -1.9
CCDC9Q9Y3X0 Y_RNA.269-201ENST00000364685 89 ntBASIC3.16□□□□□ -1.9
CCDC9Q9Y3X0 Y_RNA.361-201ENST00000365515 120 ntBASIC3.16□□□□□ -1.9
CCDC9Q9Y3X0 RPL21P1-201ENST00000399532 476 ntBASIC3.16□□□□□ -1.9
CCDC9Q9Y3X0 RNA5SP100-201ENST00000410903 110 ntBASIC3.16□□□□□ -1.9
CCDC9Q9Y3X0 RNA5SP59-201ENST00000410922 110 ntBASIC3.16□□□□□ -1.9
CCDC9Q9Y3X0 AC245047.4-201ENST00000433189 144 ntBASIC3.16□□□□□ -1.9
CCDC9Q9Y3X0 POLR2KP2-201ENST00000438155 177 ntBASIC3.16□□□□□ -1.9
CCDC9Q9Y3X0 5S_rRNA.3-201ENST00000517021 110 ntBASIC3.16□□□□□ -1.9
CCDC9Q9Y3X0 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC9Q9Y3X0 AC004486.1-201ENST00000546846 233 ntBASIC3.16□□□□□ -1.9
CCDC9Q9Y3X0 MIR4781-201ENST00000585250 76 ntBASIC3.16□□□□□ -1.9
CCDC9Q9Y3X0 5S_rRNA.19-201ENST00000612131 110 ntBASIC3.16□□□□□ -1.9
CCDC9Q9Y3X0 5S_rRNA.18-201ENST00000621941 110 ntBASIC3.16□□□□□ -1.9
CCDC9Q9Y3X0 WARS-244ENST00000627608 123 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC9Q9Y3X0 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
CCDC9Q9Y3X0 RNU6-112P-201ENST00000363599 104 ntBASIC3.15□□□□□ -1.91
CCDC9Q9Y3X0 RNU6-702P-201ENST00000364982 107 ntBASIC3.15□□□□□ -1.91
CCDC9Q9Y3X0 Y_RNA.329-201ENST00000365209 107 ntBASIC3.15□□□□□ -1.91
CCDC9Q9Y3X0 SNORA67.3-201ENST00000384366 140 ntBASIC3.15□□□□□ -1.91
CCDC9Q9Y3X0 RNU6-376P-201ENST00000384731 106 ntBASIC3.15□□□□□ -1.91
CCDC9Q9Y3X0 RNU6-713P-201ENST00000384761 107 ntBASIC3.15□□□□□ -1.91
CCDC9Q9Y3X0 AL590004.2-201ENST00000404787 371 ntBASIC3.15□□□□□ -1.91
CCDC9Q9Y3X0 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC9Q9Y3X0 LINC01399-202ENST00000458450 244 ntBASIC3.15□□□□□ -1.91
CCDC9Q9Y3X0 AL163195.1-201ENST00000496941 348 ntBASIC3.15□□□□□ -1.91
CCDC9Q9Y3X0 MIR4299-201ENST00000577899 72 ntBASIC3.15□□□□□ -1.91
CCDC9Q9Y3X0 AC127459.3-201ENST00000624328 466 ntBASIC3.15□□□□□ -1.91
CCDC9Q9Y3X0 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC9Q9Y3X0 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
CCDC9Q9Y3X0 Y_RNA.47-201ENST00000362697 108 ntBASIC3.14□□□□□ -1.91
CCDC9Q9Y3X0 RNU4-90P-201ENST00000362773 141 ntBASIC3.14□□□□□ -1.91
CCDC9Q9Y3X0 RNU6-710P-201ENST00000410424 105 ntBASIC3.14□□□□□ -1.91
CCDC9Q9Y3X0 MTATP8P1-201ENST00000467115 207 ntBASIC3.14□□□□□ -1.91
CCDC9Q9Y3X0 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC9Q9Y3X0 AC025465.3-201ENST00000510570 311 ntBASIC3.14□□□□□ -1.91
CCDC9Q9Y3X0 RNU6-635P-201ENST00000516651 102 ntBASIC3.14□□□□□ -1.91
CCDC9Q9Y3X0 RNU6-295P-201ENST00000516901 104 ntBASIC3.14□□□□□ -1.91
CCDC9Q9Y3X0 AL161670.1-201ENST00000554348 137 ntBASIC3.14□□□□□ -1.91
CCDC9Q9Y3X0 AC073413.2-201ENST00000604332 360 ntBASIC3.14□□□□□ -1.91
CCDC9Q9Y3X0 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
CCDC9Q9Y3X0 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC9Q9Y3X0 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC9Q9Y3X0 Y_RNA.105-201ENST00000363182 111 ntBASIC3.13□□□□□ -1.91
CCDC9Q9Y3X0 Y_RNA.188-201ENST00000363952 111 ntBASIC3.13□□□□□ -1.91
CCDC9Q9Y3X0 RNA5SP456-201ENST00000364002 114 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms