Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.73□□□□□ -1.81
CHMP3Q9Y3E7 MLLT10P1-201ENST00000418346 262 ntBASIC3.73□□□□□ -1.81
CHMP3Q9Y3E7 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC3.73□□□□□ -1.81
CHMP3Q9Y3E7 RPL30P4-201ENST00000429309 333 ntBASIC3.73□□□□□ -1.81
CHMP3Q9Y3E7 RPS12P18-201ENST00000442381 270 ntBASIC3.73□□□□□ -1.81
CHMP3Q9Y3E7 RNU6-1299P-201ENST00000516316 100 ntBASIC3.73□□□□□ -1.81
CHMP3Q9Y3E7 AC068657.1-201ENST00000520807 306 ntBASIC3.73□□□□□ -1.81
CHMP3Q9Y3E7 RPL23AP91-201ENST00000569211 455 ntBASIC3.73□□□□□ -1.81
CHMP3Q9Y3E7 AL033523.1-201ENST00000605153 153 ntBASIC3.73□□□□□ -1.81
CHMP3Q9Y3E7 MIR7106-201ENST00000612419 65 ntBASIC3.73□□□□□ -1.81
CHMP3Q9Y3E7 AC007318.2-201ENST00000620999 243 ntBASIC3.73□□□□□ -1.81
CHMP3Q9Y3E7 MIR3914-2-201ENST00000637339 95 ntBASIC3.73□□□□□ -1.81
CHMP3Q9Y3E7 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.73□□□□□ -1.81
CHMP3Q9Y3E7 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CHMP3Q9Y3E7 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC3.72□□□□□ -1.81
CHMP3Q9Y3E7 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.72□□□□□ -1.81
CHMP3Q9Y3E7 Y_RNA.111-201ENST00000363248 100 ntBASIC3.72□□□□□ -1.81
CHMP3Q9Y3E7 RNU6-1080P-201ENST00000383982 107 ntBASIC3.72□□□□□ -1.81
CHMP3Q9Y3E7 SNORA72-201ENST00000384339 132 ntBASIC3.72□□□□□ -1.81
CHMP3Q9Y3E7 RNU6-1235P-201ENST00000384559 107 ntBASIC3.72□□□□□ -1.81
CHMP3Q9Y3E7 RNA5SP293-201ENST00000410527 113 ntBASIC3.72□□□□□ -1.81
CHMP3Q9Y3E7 RPS4XP11-201ENST00000446897 772 ntBASIC3.72□□□□□ -1.81
CHMP3Q9Y3E7 RNU6-498P-201ENST00000459468 107 ntBASIC3.72□□□□□ -1.81
CHMP3Q9Y3E7 YWHAEP4-201ENST00000505390 198 ntBASIC3.72□□□□□ -1.81
CHMP3Q9Y3E7 Y_RNA.709-201ENST00000516952 92 ntBASIC3.72□□□□□ -1.81
CHMP3Q9Y3E7 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.72□□□□□ -1.81
CHMP3Q9Y3E7 AC004832.5-201ENST00000608677 401 ntBASIC3.72□□□□□ -1.81
CHMP3Q9Y3E7 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CHMP3Q9Y3E7 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.71□□□□□ -1.82
CHMP3Q9Y3E7 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.71□□□□□ -1.82
CHMP3Q9Y3E7 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.71□□□□□ -1.82
CHMP3Q9Y3E7 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.71□□□□□ -1.82
CHMP3Q9Y3E7 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
CHMP3Q9Y3E7 Y_RNA.280-201ENST00000364765 112 ntBASIC3.71□□□□□ -1.82
CHMP3Q9Y3E7 RNU6-438P-201ENST00000365561 103 ntBASIC3.71□□□□□ -1.82
CHMP3Q9Y3E7 MIR218-1-201ENST00000384999 110 ntBASIC3.71□□□□□ -1.82
CHMP3Q9Y3E7 Y_RNA.630-201ENST00000411370 108 ntBASIC3.71□□□□□ -1.82
CHMP3Q9Y3E7 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.71□□□□□ -1.82
CHMP3Q9Y3E7 RPS27P29-201ENST00000463110 252 ntBASIC3.71□□□□□ -1.82
CHMP3Q9Y3E7 PRELID2P1-201ENST00000552837 301 ntBASIC3.71□□□□□ -1.82
CHMP3Q9Y3E7 Y_RNA.757-201ENST00000578934 114 ntBASIC3.71□□□□□ -1.82
CHMP3Q9Y3E7 AC090115.4-201ENST00000609970 188 ntBASIC3.71□□□□□ -1.82
CHMP3Q9Y3E7 MTND5P32-201ENST00000560711 1802 ntBASIC3.7□□□□□ -1.82
CHMP3Q9Y3E7 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CHMP3Q9Y3E7 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CHMP3Q9Y3E7 RNU1-22P-201ENST00000363334 158 ntBASIC3.7□□□□□ -1.82
CHMP3Q9Y3E7 Y_RNA.203-201ENST00000364106 102 ntBASIC3.7□□□□□ -1.82
CHMP3Q9Y3E7 RNU6-1240P-201ENST00000365155 104 ntBASIC3.7□□□□□ -1.82
CHMP3Q9Y3E7 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.7□□□□□ -1.82
CHMP3Q9Y3E7 AC245102.2-201ENST00000448956 180 ntBASIC3.7□□□□□ -1.82
CHMP3Q9Y3E7 HMGN2P18-201ENST00000450680 270 ntBASIC3.7□□□□□ -1.82
CHMP3Q9Y3E7 SNORA59A-201ENST00000459326 152 ntBASIC3.7□□□□□ -1.82
CHMP3Q9Y3E7 RNU2-60P-201ENST00000517290 128 ntBASIC3.7□□□□□ -1.82
CHMP3Q9Y3E7 AC108081.1-201ENST00000604358 221 ntBASIC3.7□□□□□ -1.82
CHMP3Q9Y3E7 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.7□□□□□ -1.82
CHMP3Q9Y3E7 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 RNU6-1298P-201ENST00000362456 101 ntBASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 SNORA5B-201ENST00000363786 132 ntBASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 RNU6-743P-201ENST00000364151 106 ntBASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 RNU2-55P-201ENST00000411146 174 ntBASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 AL139132.1-201ENST00000431587 344 ntBASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 AC107083.1-201ENST00000439643 279 ntBASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 SNORD11-201ENST00000459124 84 ntBASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 CYCTP-201ENST00000504253 315 ntBASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 AC097462.1-201ENST00000514125 324 ntBASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 SNORD77.4-201ENST00000516158 81 ntBASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 SNORD33.1-201ENST00000516213 88 ntBASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 Y_RNA.692-201ENST00000516627 105 ntBASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 AC018630.3-201ENST00000542637 96 ntBASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 uc_338.4-201ENST00000616635 176 ntBASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 AC006435.5-201ENST00000624486 112 ntBASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
CHMP3Q9Y3E7 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC3.68□□□□□ -1.82
CHMP3Q9Y3E7 Y_RNA.796-201ENST00000364268 102 ntBASIC3.68□□□□□ -1.82
CHMP3Q9Y3E7 Y_RNA.634-201ENST00000364811 113 ntBASIC3.68□□□□□ -1.82
CHMP3Q9Y3E7 Y_RNA.799-201ENST00000364992 102 ntBASIC3.68□□□□□ -1.82
CHMP3Q9Y3E7 RNU2-70P-201ENST00000410718 179 ntBASIC3.68□□□□□ -1.82
CHMP3Q9Y3E7 AC008134.1-201ENST00000420943 193 ntBASIC3.68□□□□□ -1.82
CHMP3Q9Y3E7 AL158147.1-201ENST00000443970 75 ntBASIC3.68□□□□□ -1.82
CHMP3Q9Y3E7 RNU6-589P-201ENST00000516485 107 ntBASIC3.68□□□□□ -1.82
CHMP3Q9Y3E7 RNA5SP490-201ENST00000517141 136 ntBASIC3.68□□□□□ -1.82
CHMP3Q9Y3E7 AL160236.1-201ENST00000556317 195 ntBASIC3.68□□□□□ -1.82
CHMP3Q9Y3E7 MIR4438-201ENST00000585271 93 ntBASIC3.68□□□□□ -1.82
CHMP3Q9Y3E7 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
CHMP3Q9Y3E7 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.68□□□□□ -1.82
CHMP3Q9Y3E7 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.67□□□□□ -1.82
CHMP3Q9Y3E7 Y_RNA.114-201ENST00000363265 113 ntBASIC3.67□□□□□ -1.82
CHMP3Q9Y3E7 Y_RNA.120-201ENST00000363304 110 ntBASIC3.67□□□□□ -1.82
CHMP3Q9Y3E7 RNU6-1209P-201ENST00000363655 107 ntBASIC3.67□□□□□ -1.82
CHMP3Q9Y3E7 SNORA22-201ENST00000383907 134 ntBASIC3.67□□□□□ -1.82
CHMP3Q9Y3E7 RNA5SP274-201ENST00000410484 108 ntBASIC3.67□□□□□ -1.82
CHMP3Q9Y3E7 RNU7-172P-201ENST00000517125 64 ntBASIC3.67□□□□□ -1.82
CHMP3Q9Y3E7 AC245166.1-201ENST00000521012 253 ntBASIC3.67□□□□□ -1.82
CHMP3Q9Y3E7 CYCSP26-201ENST00000534107 320 ntBASIC3.67□□□□□ -1.82
CHMP3Q9Y3E7 MIR3121-201ENST00000579680 77 ntBASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms