Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 U6.104-201ENST00000637979 90 ntBASIC2□□□□□ -2.09
SIX4Q9UIU6 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.99□□□□□ -2.09
SIX4Q9UIU6 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.99□□□□□ -2.09
SIX4Q9UIU6 Y_RNA.307-201ENST00000365022 117 ntBASIC1.99□□□□□ -2.09
SIX4Q9UIU6 Y_RNA.383-201ENST00000383855 97 ntBASIC1.99□□□□□ -2.09
SIX4Q9UIU6 SNORA40.18-201ENST00000391200 128 ntBASIC1.99□□□□□ -2.09
SIX4Q9UIU6 AL356379.1-201ENST00000414105 126 ntBASIC1.99□□□□□ -2.09
SIX4Q9UIU6 AL445685.2-201ENST00000422551 342 ntBASIC1.99□□□□□ -2.09
SIX4Q9UIU6 POLR2KP2-201ENST00000438155 177 ntBASIC1.99□□□□□ -2.09
SIX4Q9UIU6 AL357134.1-201ENST00000445848 426 ntBASIC1.99□□□□□ -2.09
SIX4Q9UIU6 RNU6-1132P-201ENST00000459214 107 ntBASIC1.99□□□□□ -2.09
SIX4Q9UIU6 AC079804.2-201ENST00000490376 200 ntBASIC1.99□□□□□ -2.09
SIX4Q9UIU6 RNU7-193P-201ENST00000516723 65 ntBASIC1.99□□□□□ -2.09
SIX4Q9UIU6 SCARNA24.2-201ENST00000516968 130 ntBASIC1.99□□□□□ -2.09
SIX4Q9UIU6 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.99□□□□□ -2.09
SIX4Q9UIU6 AC012433.1-201ENST00000588916 398 ntBASIC1.99□□□□□ -2.09
SIX4Q9UIU6 AC062037.2-201ENST00000610137 73 ntBASIC1.99□□□□□ -2.09
SIX4Q9UIU6 SDR42E1P4-201ENST00000620894 481 ntBASIC1.99□□□□□ -2.09
SIX4Q9UIU6 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.99□□□□□ -2.09
SIX4Q9UIU6 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
SIX4Q9UIU6 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
SIX4Q9UIU6 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.98□□□□□ -2.09
SIX4Q9UIU6 AL391987.6-201ENST00000305671 199 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 SNORD115-3-201ENST00000363100 82 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 Y_RNA.99-201ENST00000363138 105 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 SNORD114-6-201ENST00000364393 72 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 Y_RNA.243-201ENST00000364481 109 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 Y_RNA.401-201ENST00000383965 117 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 Y_RNA.569-201ENST00000384749 103 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 MIR583-201ENST00000384846 75 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
SIX4Q9UIU6 MIR764-201ENST00000390811 85 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 AL031003.1-201ENST00000404229 172 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 AL355796.1-201ENST00000406706 323 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 CYCSP49-201ENST00000420810 319 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 RNU6-436P-201ENST00000516171 114 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 Y_RNA.680-201ENST00000516441 93 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 RNU2-34P-201ENST00000516534 121 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 RNU6-295P-201ENST00000516901 104 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 RNU6-856P-201ENST00000516959 98 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 AC025647.1-201ENST00000517879 253 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 DEFB117-201ENST00000602356 141 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 AC006380.1-201ENST00000603598 186 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 AC005828.6-201ENST00000606610 232 ntBASIC1.98□□□□□ -2.09
SIX4Q9UIU6 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.98□□□□□ -2.09
SIX4Q9UIU6 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
SIX4Q9UIU6 Y_RNA.14-201ENST00000362415 103 ntBASIC1.97□□□□□ -2.09
SIX4Q9UIU6 Y_RNA.124-201ENST00000363339 93 ntBASIC1.97□□□□□ -2.09
SIX4Q9UIU6 RNU6-324P-201ENST00000363957 106 ntBASIC1.97□□□□□ -2.09
SIX4Q9UIU6 Y_RNA.329-201ENST00000365209 107 ntBASIC1.97□□□□□ -2.09
SIX4Q9UIU6 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.97□□□□□ -2.09
SIX4Q9UIU6 MTND1P19-201ENST00000511780 315 ntBASIC1.97□□□□□ -2.09
SIX4Q9UIU6 AC027419.1-201ENST00000522976 328 ntBASIC1.97□□□□□ -2.09
SIX4Q9UIU6 AC087441.2-201ENST00000529141 262 ntBASIC1.97□□□□□ -2.09
SIX4Q9UIU6 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.97□□□□□ -2.09
SIX4Q9UIU6 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.97□□□□□ -2.09
SIX4Q9UIU6 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
SIX4Q9UIU6 RNU4-80P-201ENST00000363200 141 ntBASIC1.96□□□□□ -2.1
SIX4Q9UIU6 RNU6-1164P-201ENST00000364428 107 ntBASIC1.96□□□□□ -2.1
SIX4Q9UIU6 Y_RNA.361-201ENST00000365515 120 ntBASIC1.96□□□□□ -2.1
SIX4Q9UIU6 Y_RNA.562-201ENST00000384695 113 ntBASIC1.96□□□□□ -2.1
SIX4Q9UIU6 EDDM3CP-201ENST00000415977 425 ntBASIC1.96□□□□□ -2.1
SIX4Q9UIU6 AC060773.1-201ENST00000421698 310 ntBASIC1.96□□□□□ -2.1
SIX4Q9UIU6 HMGN2P38-201ENST00000423806 265 ntBASIC1.96□□□□□ -2.1
SIX4Q9UIU6 MTCO1P5-201ENST00000433573 344 ntBASIC1.96□□□□□ -2.1
SIX4Q9UIU6 SNORD65B-201ENST00000459126 73 ntBASIC1.96□□□□□ -2.1
SIX4Q9UIU6 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
SIX4Q9UIU6 AC107393.1-201ENST00000512403 346 ntBASIC1.96□□□□□ -2.1
SIX4Q9UIU6 SERF1AP1-201ENST00000514575 187 ntBASIC1.96□□□□□ -2.1
SIX4Q9UIU6 RNU2-31P-201ENST00000516954 155 ntBASIC1.96□□□□□ -2.1
SIX4Q9UIU6 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.96□□□□□ -2.1
SIX4Q9UIU6 MIR3126-201ENST00000577443 74 ntBASIC1.96□□□□□ -2.1
SIX4Q9UIU6 AC007229.1-201ENST00000590455 412 ntBASIC1.96□□□□□ -2.1
SIX4Q9UIU6 AC010900.2-201ENST00000604508 210 ntBASIC1.96□□□□□ -2.1
SIX4Q9UIU6 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.95□□□□□ -2.1
SIX4Q9UIU6 MIR335-201ENST00000362173 94 ntBASIC1.95□□□□□ -2.1
SIX4Q9UIU6 Y_RNA.136-201ENST00000363444 102 ntBASIC1.95□□□□□ -2.1
SIX4Q9UIU6 Y_RNA.350-201ENST00000365409 98 ntBASIC1.95□□□□□ -2.1
SIX4Q9UIU6 Y_RNA.447-201ENST00000384184 113 ntBASIC1.95□□□□□ -2.1
SIX4Q9UIU6 SNORA20B-201ENST00000384220 132 ntBASIC1.95□□□□□ -2.1
SIX4Q9UIU6 Y_RNA.477-201ENST00000384352 108 ntBASIC1.95□□□□□ -2.1
SIX4Q9UIU6 MIR504-201ENST00000385065 83 ntBASIC1.95□□□□□ -2.1
SIX4Q9UIU6 SNORA53-201ENST00000391141 249 ntBASIC1.95□□□□□ -2.1
SIX4Q9UIU6 SNORA26.9-201ENST00000391322 122 ntBASIC1.95□□□□□ -2.1
SIX4Q9UIU6 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.95□□□□□ -2.1
SIX4Q9UIU6 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.95□□□□□ -2.1
SIX4Q9UIU6 RPL23AP63-201ENST00000498752 471 ntBASIC1.95□□□□□ -2.1
SIX4Q9UIU6 SNORA31.25-201ENST00000517242 134 ntBASIC1.95□□□□□ -2.1
SIX4Q9UIU6 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
SIX4Q9UIU6 RPL21P9-201ENST00000556149 474 ntBASIC1.95□□□□□ -2.1
SIX4Q9UIU6 AC026271.5-201ENST00000577873 130 ntBASIC1.95□□□□□ -2.1
SIX4Q9UIU6 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.95□□□□□ -2.1
SIX4Q9UIU6 MIR3935-201ENST00000583472 104 ntBASIC1.95□□□□□ -2.1
SIX4Q9UIU6 AL031274.2-201ENST00000599419 203 ntBASIC1.95□□□□□ -2.1
SIX4Q9UIU6 AC006006.1-201ENST00000603082 144 ntBASIC1.95□□□□□ -2.1
SIX4Q9UIU6 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.95□□□□□ -2.1
SIX4Q9UIU6 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
SIX4Q9UIU6 AC008555.8-201ENST00000623602 2168 ntBASIC1.95□□□□□ -2.1
SIX4Q9UIU6 SNORA25.1-201ENST00000362326 128 ntBASIC1.94□□□□□ -2.1
SIX4Q9UIU6 Y_RNA.60-201ENST00000362831 98 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 125.9 ms