Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 HSBP1P1-201ENST00000555205 166 ntBASIC1.78□□□□□ -2.12
ZNF541Q9H0D2 AL137100.2-201ENST00000555786 315 ntBASIC1.78□□□□□ -2.12
ZNF541Q9H0D2 RPS29P30-201ENST00000600975 111 ntBASIC1.78□□□□□ -2.12
ZNF541Q9H0D2 AL080274.1-201ENST00000605565 220 ntBASIC1.78□□□□□ -2.12
ZNF541Q9H0D2 AC091925.1-201ENST00000623204 462 ntBASIC1.78□□□□□ -2.12
ZNF541Q9H0D2 AC138305.3-201ENST00000624988 240 ntBASIC1.78□□□□□ -2.12
ZNF541Q9H0D2 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.78□□□□□ -2.12
ZNF541Q9H0D2 RNU1-93P-201ENST00000364704 169 ntBASIC1.77□□□□□ -2.13
ZNF541Q9H0D2 RNU6-1264P-201ENST00000383891 107 ntBASIC1.77□□□□□ -2.13
ZNF541Q9H0D2 RNU6-342P-201ENST00000384521 104 ntBASIC1.77□□□□□ -2.13
ZNF541Q9H0D2 RNA5SP467-201ENST00000391274 118 ntBASIC1.77□□□□□ -2.13
ZNF541Q9H0D2 AC069257.2-201ENST00000441819 155 ntBASIC1.77□□□□□ -2.13
ZNF541Q9H0D2 RPS27P22-201ENST00000478056 241 ntBASIC1.77□□□□□ -2.13
ZNF541Q9H0D2 AL442163.3-201ENST00000554110 156 ntBASIC1.77□□□□□ -2.13
ZNF541Q9H0D2 AC024614.2-201ENST00000577584 372 ntBASIC1.77□□□□□ -2.13
ZNF541Q9H0D2 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.77□□□□□ -2.13
ZNF541Q9H0D2 VN1R91P-201ENST00000594377 169 ntBASIC1.77□□□□□ -2.13
ZNF541Q9H0D2 MIR6078-201ENST00000611069 100 ntBASIC1.77□□□□□ -2.13
ZNF541Q9H0D2 AC006157.1-201ENST00000611750 366 ntBASIC1.77□□□□□ -2.13
ZNF541Q9H0D2 AL357075.2-201ENST00000614906 189 ntBASIC1.77□□□□□ -2.13
ZNF541Q9H0D2 AC090971.5-201ENST00000621102 293 ntBASIC1.77□□□□□ -2.13
ZNF541Q9H0D2 AC090574.1-201ENST00000623186 233 ntBASIC1.77□□□□□ -2.13
ZNF541Q9H0D2 MIR3674-201ENST00000636576 68 ntBASIC1.77□□□□□ -2.13
ZNF541Q9H0D2 MIR369-201ENST00000362155 70 ntBASIC1.76□□□□□ -2.13
ZNF541Q9H0D2 Y_RNA.197-201ENST00000364004 102 ntBASIC1.76□□□□□ -2.13
ZNF541Q9H0D2 Y_RNA.813-201ENST00000364639 102 ntBASIC1.76□□□□□ -2.13
ZNF541Q9H0D2 RNU4-42P-201ENST00000364738 142 ntBASIC1.76□□□□□ -2.13
ZNF541Q9H0D2 MIR515-2-201ENST00000384883 83 ntBASIC1.76□□□□□ -2.13
ZNF541Q9H0D2 MIR515-1-201ENST00000384884 83 ntBASIC1.76□□□□□ -2.13
ZNF541Q9H0D2 RNA5SP100-201ENST00000410903 110 ntBASIC1.76□□□□□ -2.13
ZNF541Q9H0D2 RNA5SP59-201ENST00000410922 110 ntBASIC1.76□□□□□ -2.13
ZNF541Q9H0D2 ELOCP21-201ENST00000412558 336 ntBASIC1.76□□□□□ -2.13
ZNF541Q9H0D2 FCF1P4-201ENST00000448326 183 ntBASIC1.76□□□□□ -2.13
ZNF541Q9H0D2 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.76□□□□□ -2.13
ZNF541Q9H0D2 AC023442.1-201ENST00000531247 422 ntBASIC1.76□□□□□ -2.13
ZNF541Q9H0D2 SUB1P4-201ENST00000566062 339 ntBASIC1.76□□□□□ -2.13
ZNF541Q9H0D2 MIR4713-201ENST00000582691 75 ntBASIC1.76□□□□□ -2.13
ZNF541Q9H0D2 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.76□□□□□ -2.13
ZNF541Q9H0D2 AL359075.3-201ENST00000613288 217 ntBASIC1.76□□□□□ -2.13
ZNF541Q9H0D2 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.76□□□□□ -2.13
ZNF541Q9H0D2 AL160413.1-201ENST00000622780 310 ntBASIC1.76□□□□□ -2.13
ZNF541Q9H0D2 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.76□□□□□ -2.13
ZNF541Q9H0D2 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
ZNF541Q9H0D2 Y_RNA.36-201ENST00000362602 112 ntBASIC1.75□□□□□ -2.13
ZNF541Q9H0D2 Y_RNA.395-201ENST00000383945 109 ntBASIC1.75□□□□□ -2.13
ZNF541Q9H0D2 SNORD78.2-201ENST00000391076 69 ntBASIC1.75□□□□□ -2.13
ZNF541Q9H0D2 AC018865.2-201ENST00000423631 129 ntBASIC1.75□□□□□ -2.13
ZNF541Q9H0D2 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.75□□□□□ -2.13
ZNF541Q9H0D2 AL137792.2-201ENST00000443484 235 ntBASIC1.75□□□□□ -2.13
ZNF541Q9H0D2 SNORD65B-201ENST00000459126 73 ntBASIC1.75□□□□□ -2.13
ZNF541Q9H0D2 AC010469.2-201ENST00000496412 480 ntBASIC1.75□□□□□ -2.13
ZNF541Q9H0D2 AC010598.1-201ENST00000510378 103 ntBASIC1.75□□□□□ -2.13
ZNF541Q9H0D2 SNORA31.17-201ENST00000516953 127 ntBASIC1.75□□□□□ -2.13
ZNF541Q9H0D2 AL138825.1-201ENST00000618587 192 ntBASIC1.75□□□□□ -2.13
ZNF541Q9H0D2 uc_338.22-201ENST00000622722 187 ntBASIC1.75□□□□□ -2.13
ZNF541Q9H0D2 AC022513.1-201ENST00000624512 117 ntBASIC1.75□□□□□ -2.13
ZNF541Q9H0D2 RNU6-112P-201ENST00000363599 104 ntBASIC1.74□□□□□ -2.13
ZNF541Q9H0D2 Y_RNA.252-201ENST00000364556 101 ntBASIC1.74□□□□□ -2.13
ZNF541Q9H0D2 Y_RNA.287-201ENST00000364853 94 ntBASIC1.74□□□□□ -2.13
ZNF541Q9H0D2 Y_RNA.460-201ENST00000384255 102 ntBASIC1.74□□□□□ -2.13
ZNF541Q9H0D2 AC016909.1-201ENST00000415916 166 ntBASIC1.74□□□□□ -2.13
ZNF541Q9H0D2 RAB28P5-201ENST00000427490 651 ntBASIC1.74□□□□□ -2.13
ZNF541Q9H0D2 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.74□□□□□ -2.13
ZNF541Q9H0D2 Y_RNA.639-201ENST00000458981 102 ntBASIC1.74□□□□□ -2.13
ZNF541Q9H0D2 AC010409.1-201ENST00000487382 476 ntBASIC1.74□□□□□ -2.13
ZNF541Q9H0D2 MIR3684-201ENST00000579779 74 ntBASIC1.74□□□□□ -2.13
ZNF541Q9H0D2 AC006380.1-201ENST00000603598 186 ntBASIC1.74□□□□□ -2.13
ZNF541Q9H0D2 AL353149.1-201ENST00000610667 244 ntBASIC1.74□□□□□ -2.13
ZNF541Q9H0D2 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
ZNF541Q9H0D2 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.74□□□□□ -2.13
ZNF541Q9H0D2 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
ZNF541Q9H0D2 Y_RNA.31-201ENST00000362574 102 ntBASIC1.73□□□□□ -2.13
ZNF541Q9H0D2 Y_RNA.138-201ENST00000363462 102 ntBASIC1.73□□□□□ -2.13
ZNF541Q9H0D2 RNU6-414P-201ENST00000363705 104 ntBASIC1.73□□□□□ -2.13
ZNF541Q9H0D2 SNORD114-27-201ENST00000363766 70 ntBASIC1.73□□□□□ -2.13
ZNF541Q9H0D2 RNU6-407P-201ENST00000365280 104 ntBASIC1.73□□□□□ -2.13
ZNF541Q9H0D2 RNU6-474P-201ENST00000384243 107 ntBASIC1.73□□□□□ -2.13
ZNF541Q9H0D2 MIR520E-201ENST00000384867 87 ntBASIC1.73□□□□□ -2.13
ZNF541Q9H0D2 AL117342.1-201ENST00000404861 406 ntBASIC1.73□□□□□ -2.13
ZNF541Q9H0D2 COX6CP10-201ENST00000416832 224 ntBASIC1.73□□□□□ -2.13
ZNF541Q9H0D2 AC073910.1-201ENST00000445047 438 ntBASIC1.73□□□□□ -2.13
ZNF541Q9H0D2 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.73□□□□□ -2.13
ZNF541Q9H0D2 RNU6-911P-201ENST00000516523 104 ntBASIC1.73□□□□□ -2.13
ZNF541Q9H0D2 SNORA44.1-201ENST00000517031 108 ntBASIC1.73□□□□□ -2.13
ZNF541Q9H0D2 AC023157.2-201ENST00000540596 141 ntBASIC1.73□□□□□ -2.13
ZNF541Q9H0D2 MIR4659A-201ENST00000580269 81 ntBASIC1.73□□□□□ -2.13
ZNF541Q9H0D2 AC022432.1-201ENST00000595739 310 ntBASIC1.73□□□□□ -2.13
ZNF541Q9H0D2 AC011476.5-201ENST00000615594 130 ntBASIC1.73□□□□□ -2.13
ZNF541Q9H0D2 AC004467.1-201ENST00000615678 330 ntBASIC1.73□□□□□ -2.13
ZNF541Q9H0D2 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
ZNF541Q9H0D2 RNU6-708P-201ENST00000384217 107 ntBASIC1.72□□□□□ -2.13
ZNF541Q9H0D2 RNY3P4-201ENST00000384428 101 ntBASIC1.72□□□□□ -2.13
ZNF541Q9H0D2 RNU6-308P-201ENST00000390957 107 ntBASIC1.72□□□□□ -2.13
ZNF541Q9H0D2 MIR1304-201ENST00000408243 91 ntBASIC1.72□□□□□ -2.13
ZNF541Q9H0D2 AL160004.2-201ENST00000432935 350 ntBASIC1.72□□□□□ -2.13
ZNF541Q9H0D2 HSPE1P9-201ENST00000440046 311 ntBASIC1.72□□□□□ -2.13
ZNF541Q9H0D2 RPS29P1-201ENST00000465274 159 ntBASIC1.72□□□□□ -2.13
ZNF541Q9H0D2 AL163195.1-201ENST00000496941 348 ntBASIC1.72□□□□□ -2.13
ZNF541Q9H0D2 RPL21P9-201ENST00000556149 474 ntBASIC1.72□□□□□ -2.13
ZNF541Q9H0D2 MIR3122-201ENST00000577243 73 ntBASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms