Protein–RNA interactions for Protein: Q9C0J9

BHLHE41, Class E basic helix-loop-helix protein 41, humanhuman

Predicted RBP Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BHLHE41Q9C0J9 RNU7-99P-201ENST00000516271 62 ntBASIC3.21□□□□□ -1.9
BHLHE41Q9C0J9 RNU6-589P-201ENST00000516485 107 ntBASIC3.21□□□□□ -1.9
BHLHE41Q9C0J9 RNU6-504P-201ENST00000516568 104 ntBASIC3.21□□□□□ -1.9
BHLHE41Q9C0J9 RNU6-1291P-201ENST00000516591 104 ntBASIC3.21□□□□□ -1.9
BHLHE41Q9C0J9 RNU2-60P-201ENST00000517290 128 ntBASIC3.21□□□□□ -1.9
BHLHE41Q9C0J9 AL365205.2-201ENST00000594586 68 ntBASIC3.21□□□□□ -1.9
BHLHE41Q9C0J9 AL359075.3-201ENST00000613288 217 ntBASIC3.21□□□□□ -1.9
BHLHE41Q9C0J9 AL121890.5-201ENST00000620848 304 ntBASIC3.21□□□□□ -1.9
BHLHE41Q9C0J9 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
BHLHE41Q9C0J9 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
BHLHE41Q9C0J9 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
BHLHE41Q9C0J9 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.21□□□□□ -1.9
BHLHE41Q9C0J9 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.2□□□□□ -1.9
BHLHE41Q9C0J9 RNU1-96P-201ENST00000364163 162 ntBASIC3.2□□□□□ -1.9
BHLHE41Q9C0J9 RNU6-309P-201ENST00000364573 106 ntBASIC3.2□□□□□ -1.9
BHLHE41Q9C0J9 SNORD58C-201ENST00000365223 64 ntBASIC3.2□□□□□ -1.9
BHLHE41Q9C0J9 SNORA48.8-201ENST00000391324 134 ntBASIC3.2□□□□□ -1.9
BHLHE41Q9C0J9 Y_RNA.630-201ENST00000411370 108 ntBASIC3.2□□□□□ -1.9
BHLHE41Q9C0J9 MRPS17P9-201ENST00000511924 393 ntBASIC3.2□□□□□ -1.9
BHLHE41Q9C0J9 RNU6-667P-201ENST00000517186 102 ntBASIC3.2□□□□□ -1.9
BHLHE41Q9C0J9 SNORA70.24-201ENST00000517233 118 ntBASIC3.2□□□□□ -1.9
BHLHE41Q9C0J9 AC007751.1-201ENST00000529260 376 ntBASIC3.2□□□□□ -1.9
BHLHE41Q9C0J9 U3.45-201ENST00000607547 219 ntBASIC3.2□□□□□ -1.9
BHLHE41Q9C0J9 AC073476.4-201ENST00000628409 72 ntBASIC3.2□□□□□ -1.9
BHLHE41Q9C0J9 MIR340-201ENST00000362125 95 ntBASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 Y_RNA.66-201ENST00000362862 102 ntBASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 Y_RNA.253-201ENST00000364562 112 ntBASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 Y_RNA.267-201ENST00000364679 109 ntBASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 MIR491-201ENST00000384877 84 ntBASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 SNORA12.1-201ENST00000390873 148 ntBASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 RPS26P45-201ENST00000471748 340 ntBASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 RN7SL442P-201ENST00000473804 320 ntBASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 AC106707.2-201ENST00000484182 374 ntBASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 NDUFA4P2-201ENST00000489989 244 ntBASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 AC104619.4-201ENST00000510773 249 ntBASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 AC096725.1-201ENST00000514266 313 ntBASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 RNU6-1041P-201ENST00000516254 102 ntBASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 NDUFA5P6-201ENST00000542110 379 ntBASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 MIR3129-201ENST00000581095 76 ntBASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 AL022345.2-201ENST00000606307 135 ntBASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
BHLHE41Q9C0J9 AC093908.1-201ENST00000623125 8092 ntBASIC3.18□□□□□ -1.9
BHLHE41Q9C0J9 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
BHLHE41Q9C0J9 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
BHLHE41Q9C0J9 SNORD21-201ENST00000383953 95 ntBASIC3.18□□□□□ -1.9
BHLHE41Q9C0J9 SNORA9-201ENST00000384215 133 ntBASIC3.18□□□□□ -1.9
BHLHE41Q9C0J9 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.18□□□□□ -1.9
BHLHE41Q9C0J9 EDDM3CP-201ENST00000415977 425 ntBASIC3.18□□□□□ -1.9
BHLHE41Q9C0J9 AC104027.1-201ENST00000521887 300 ntBASIC3.18□□□□□ -1.9
BHLHE41Q9C0J9 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.18□□□□□ -1.9
BHLHE41Q9C0J9 AC091178.2-201ENST00000584401 117 ntBASIC3.18□□□□□ -1.9
BHLHE41Q9C0J9 AC022217.4-201ENST00000604389 163 ntBASIC3.18□□□□□ -1.9
BHLHE41Q9C0J9 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
BHLHE41Q9C0J9 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
BHLHE41Q9C0J9 AC073346.2-201ENST00000624724 2058 ntBASIC3.18□□□□□ -1.9
BHLHE41Q9C0J9 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
BHLHE41Q9C0J9 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
BHLHE41Q9C0J9 AC018630.2-201ENST00000534866 2403 ntBASIC3.18□□□□□ -1.9
BHLHE41Q9C0J9 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
BHLHE41Q9C0J9 AL136360.1-201ENST00000503377 1900 ntBASIC3.17□□□□□ -1.9
BHLHE41Q9C0J9 RNA5SP383-201ENST00000362934 120 ntBASIC3.17□□□□□ -1.9
BHLHE41Q9C0J9 RNU6-508P-201ENST00000363231 103 ntBASIC3.17□□□□□ -1.9
BHLHE41Q9C0J9 SNORD116-21-201ENST00000384507 92 ntBASIC3.17□□□□□ -1.9
BHLHE41Q9C0J9 MIR592-201ENST00000384959 97 ntBASIC3.17□□□□□ -1.9
BHLHE41Q9C0J9 SNORD17-201ENST00000390930 237 ntBASIC3.17□□□□□ -1.9
BHLHE41Q9C0J9 RNA5SP323-201ENST00000391094 133 ntBASIC3.17□□□□□ -1.9
BHLHE41Q9C0J9 MIR891A-201ENST00000401237 79 ntBASIC3.17□□□□□ -1.9
BHLHE41Q9C0J9 RNU2-48P-201ENST00000410694 191 ntBASIC3.17□□□□□ -1.9
BHLHE41Q9C0J9 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.17□□□□□ -1.9
BHLHE41Q9C0J9 AF228730.3-201ENST00000436691 102 ntBASIC3.17□□□□□ -1.9
BHLHE41Q9C0J9 AC018634.1-201ENST00000437554 401 ntBASIC3.17□□□□□ -1.9
BHLHE41Q9C0J9 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC3.17□□□□□ -1.9
BHLHE41Q9C0J9 RPL21P10-201ENST00000463521 490 ntBASIC3.17□□□□□ -1.9
BHLHE41Q9C0J9 Y_RNA.714-201ENST00000517065 90 ntBASIC3.17□□□□□ -1.9
BHLHE41Q9C0J9 RNU6-1270P-201ENST00000517128 108 ntBASIC3.17□□□□□ -1.9
BHLHE41Q9C0J9 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.17□□□□□ -1.9
BHLHE41Q9C0J9 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.17□□□□□ -1.9
BHLHE41Q9C0J9 MIR3922-201ENST00000585192 84 ntBASIC3.17□□□□□ -1.9
BHLHE41Q9C0J9 MIR6079-201ENST00000635807 62 ntBASIC3.17□□□□□ -1.9
BHLHE41Q9C0J9 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 RNU6-755P-201ENST00000364400 103 ntBASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 Y_RNA.242-201ENST00000364473 110 ntBASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 Y_RNA.346-201ENST00000365385 112 ntBASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 RNU6-805P-201ENST00000365643 106 ntBASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 RNA5SP467-201ENST00000391274 118 ntBASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 Y_RNA.617-201ENST00000410920 90 ntBASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 AC025518.1-201ENST00000479856 347 ntBASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 RNU6-781P-201ENST00000516377 101 ntBASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 SNORA74D-201ENST00000516404 141 ntBASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 SNORA64.4-201ENST00000516632 81 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 174 ms