Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 RNU6-436P-201ENST00000516171 114 ntBASIC2.18□□□□□ -2.06
PAAF1Q9BRP4 SCARNA24.2-201ENST00000516968 130 ntBASIC2.18□□□□□ -2.06
PAAF1Q9BRP4 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.18□□□□□ -2.06
PAAF1Q9BRP4 DEFB108E-201ENST00000524692 240 ntBASIC2.18□□□□□ -2.06
PAAF1Q9BRP4 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.18□□□□□ -2.06
PAAF1Q9BRP4 MIR3145-201ENST00000580727 82 ntBASIC2.18□□□□□ -2.06
PAAF1Q9BRP4 AC005786.1-201ENST00000588553 154 ntBASIC2.18□□□□□ -2.06
PAAF1Q9BRP4 AC245884.12-201ENST00000615364 59 ntBASIC2.18□□□□□ -2.06
PAAF1Q9BRP4 AC006435.5-201ENST00000624486 112 ntBASIC2.18□□□□□ -2.06
PAAF1Q9BRP4 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
PAAF1Q9BRP4 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
PAAF1Q9BRP4 Y_RNA.16-201ENST00000362421 102 ntBASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 RNU6-862P-201ENST00000362804 105 ntBASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 RNA5SP99-201ENST00000364020 114 ntBASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 Y_RNA.288-201ENST00000364854 92 ntBASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 Y_RNA.483-201ENST00000384380 101 ntBASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 MIR873-201ENST00000401120 77 ntBASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 RNU6-710P-201ENST00000410424 105 ntBASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 RNU6-1186P-201ENST00000410429 97 ntBASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 AC010154.1-201ENST00000425857 269 ntBASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 MRPS10P1-201ENST00000448483 130 ntBASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 HMGN2P23-201ENST00000456759 269 ntBASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 RNA5SP20-201ENST00000515976 84 ntBASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 RNU6-1338P-201ENST00000516328 91 ntBASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 RNU2-31P-201ENST00000516954 155 ntBASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 DEFB122-202ENST00000569013 197 ntBASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 MIR4503-201ENST00000582187 83 ntBASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 MIR3149-201ENST00000584629 83 ntBASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 MIR4438-201ENST00000585271 93 ntBASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 DEFB117-201ENST00000602356 141 ntBASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.17□□□□□ -2.06
PAAF1Q9BRP4 AL391987.6-201ENST00000305671 199 ntBASIC2.16□□□□□ -2.06
PAAF1Q9BRP4 SNORA25.1-201ENST00000362326 128 ntBASIC2.16□□□□□ -2.06
PAAF1Q9BRP4 SNORA27.1-201ENST00000362604 124 ntBASIC2.16□□□□□ -2.06
PAAF1Q9BRP4 RNU1-96P-201ENST00000364163 162 ntBASIC2.16□□□□□ -2.06
PAAF1Q9BRP4 RNU6-702P-201ENST00000364982 107 ntBASIC2.16□□□□□ -2.06
PAAF1Q9BRP4 RNU6-505P-201ENST00000384427 107 ntBASIC2.16□□□□□ -2.06
PAAF1Q9BRP4 MT-TW-201ENST00000387382 68 ntBASIC2.16□□□□□ -2.06
PAAF1Q9BRP4 RNU6-1248P-201ENST00000391096 64 ntBASIC2.16□□□□□ -2.06
PAAF1Q9BRP4 CYCSP49-201ENST00000420810 319 ntBASIC2.16□□□□□ -2.06
PAAF1Q9BRP4 MTND4LP30-201ENST00000454092 297 ntBASIC2.16□□□□□ -2.06
PAAF1Q9BRP4 AC108210.2-201ENST00000503681 201 ntBASIC2.16□□□□□ -2.06
PAAF1Q9BRP4 SNORA31.25-201ENST00000517242 134 ntBASIC2.16□□□□□ -2.06
PAAF1Q9BRP4 MIR5089-201ENST00000580047 84 ntBASIC2.16□□□□□ -2.06
PAAF1Q9BRP4 AC078899.2-201ENST00000595282 212 ntBASIC2.16□□□□□ -2.06
PAAF1Q9BRP4 MIR6845-201ENST00000613182 61 ntBASIC2.16□□□□□ -2.06
PAAF1Q9BRP4 MIR338-201ENST00000636369 67 ntBASIC2.16□□□□□ -2.06
PAAF1Q9BRP4 ZNF720P1-201ENST00000562403 1939 ntBASIC2.16□□□□□ -2.06
PAAF1Q9BRP4 CENPCP1-201ENST00000533085 2578 ntBASIC2.16□□□□□ -2.06
PAAF1Q9BRP4 AC092881.1-201ENST00000638218 2733 ntBASIC2.15□□□□□ -2.06
PAAF1Q9BRP4 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
PAAF1Q9BRP4 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
PAAF1Q9BRP4 Y_RNA.124-201ENST00000363339 93 ntBASIC2.15□□□□□ -2.07
PAAF1Q9BRP4 Y_RNA.287-201ENST00000364853 94 ntBASIC2.15□□□□□ -2.07
PAAF1Q9BRP4 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.15□□□□□ -2.07
PAAF1Q9BRP4 Y_RNA.638-201ENST00000459374 113 ntBASIC2.15□□□□□ -2.07
PAAF1Q9BRP4 RNU1-142P-201ENST00000516682 145 ntBASIC2.15□□□□□ -2.07
PAAF1Q9BRP4 RNA5SP402-201ENST00000517148 110 ntBASIC2.15□□□□□ -2.07
PAAF1Q9BRP4 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.15□□□□□ -2.07
PAAF1Q9BRP4 AC007229.1-201ENST00000590455 412 ntBASIC2.15□□□□□ -2.07
PAAF1Q9BRP4 AL512605.2-201ENST00000592972 256 ntBASIC2.15□□□□□ -2.07
PAAF1Q9BRP4 AC005828.6-201ENST00000606610 232 ntBASIC2.15□□□□□ -2.07
PAAF1Q9BRP4 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.15□□□□□ -2.07
PAAF1Q9BRP4 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
PAAF1Q9BRP4 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.14□□□□□ -2.07
PAAF1Q9BRP4 Y_RNA.237-201ENST00000364439 102 ntBASIC2.14□□□□□ -2.07
PAAF1Q9BRP4 RNU6-326P-201ENST00000365480 107 ntBASIC2.14□□□□□ -2.07
PAAF1Q9BRP4 Y_RNA.452-201ENST00000384202 108 ntBASIC2.14□□□□□ -2.07
PAAF1Q9BRP4 RNA5SP467-201ENST00000391274 118 ntBASIC2.14□□□□□ -2.07
PAAF1Q9BRP4 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.14□□□□□ -2.07
PAAF1Q9BRP4 SNORD23.1-201ENST00000408212 104 ntBASIC2.14□□□□□ -2.07
PAAF1Q9BRP4 MIR1283-2-201ENST00000408621 87 ntBASIC2.14□□□□□ -2.07
PAAF1Q9BRP4 RPL23AP7-203ENST00000449021 469 ntBASIC2.14□□□□□ -2.07
PAAF1Q9BRP4 RNU6-295P-201ENST00000516901 104 ntBASIC2.14□□□□□ -2.07
PAAF1Q9BRP4 AL353149.1-201ENST00000610667 244 ntBASIC2.14□□□□□ -2.07
PAAF1Q9BRP4 AL359075.3-201ENST00000613288 217 ntBASIC2.14□□□□□ -2.07
PAAF1Q9BRP4 AC127459.3-201ENST00000624328 466 ntBASIC2.14□□□□□ -2.07
PAAF1Q9BRP4 SNORD114-7-201ENST00000362520 77 ntBASIC2.13□□□□□ -2.07
PAAF1Q9BRP4 RNU4-80P-201ENST00000363200 141 ntBASIC2.13□□□□□ -2.07
PAAF1Q9BRP4 RNU6-472P-201ENST00000384299 107 ntBASIC2.13□□□□□ -2.07
PAAF1Q9BRP4 MIR515-2-201ENST00000384883 83 ntBASIC2.13□□□□□ -2.07
PAAF1Q9BRP4 MIR515-1-201ENST00000384884 83 ntBASIC2.13□□□□□ -2.07
PAAF1Q9BRP4 RNU6-855P-201ENST00000410395 104 ntBASIC2.13□□□□□ -2.07
PAAF1Q9BRP4 CST2P1-201ENST00000425770 87 ntBASIC2.13□□□□□ -2.07
PAAF1Q9BRP4 CR769767.1-201ENST00000436337 346 ntBASIC2.13□□□□□ -2.07
PAAF1Q9BRP4 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.13□□□□□ -2.07
PAAF1Q9BRP4 SERF1AP1-201ENST00000514575 187 ntBASIC2.13□□□□□ -2.07
PAAF1Q9BRP4 RNU7-172P-201ENST00000517125 64 ntBASIC2.13□□□□□ -2.07
PAAF1Q9BRP4 RPL21P9-201ENST00000556149 474 ntBASIC2.13□□□□□ -2.07
PAAF1Q9BRP4 AC110588.1-201ENST00000559699 137 ntBASIC2.13□□□□□ -2.07
PAAF1Q9BRP4 AC009127.3-201ENST00000570531 403 ntBASIC2.13□□□□□ -2.07
PAAF1Q9BRP4 MIR5094-201ENST00000578766 85 ntBASIC2.13□□□□□ -2.07
PAAF1Q9BRP4 U6.73-201ENST00000619194 103 ntBASIC2.13□□□□□ -2.07
PAAF1Q9BRP4 AC012640.5-201ENST00000623897 319 ntBASIC2.13□□□□□ -2.07
PAAF1Q9BRP4 TTK-211ENST00000627129 240 ntTSL 5 BASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms