Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 Y_RNA.557-201ENST00000384680 107 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 Y_RNA.561-201ENST00000384694 100 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 MIR150-201ENST00000385048 84 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 AC099677.2-201ENST00000436385 175 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.13□□□□□ -2.23
SCN2AQ99250 MTND3P22-201ENST00000510932 243 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 SNORA70.12-201ENST00000516084 153 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 RNU1-117P-201ENST00000517041 158 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 RNU6-264P-201ENST00000517134 104 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 MIR548S-201ENST00000581352 82 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 AC005828.6-201ENST00000606610 232 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 AC006157.1-201ENST00000611750 366 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.13□□□□□ -2.23
SCN2AQ99250 RNU6-874P-201ENST00000362390 105 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 SNORA27.1-201ENST00000362604 124 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 U3.8-201ENST00000363675 217 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 SNORD78.2-201ENST00000391076 69 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 RNU6-1001P-201ENST00000411265 100 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 RNU1-98P-201ENST00000458992 160 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 RNU7-87P-201ENST00000459343 62 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 FGF7P4-201ENST00000509595 295 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 RNU6-1041P-201ENST00000516254 102 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 RNVU1-2-201ENST00000516326 135 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 AC008269.2-201ENST00000561915 1105 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 AC022441.3-201ENST00000605737 136 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 AC022709.1-201ENST00000615967 87 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 AC126177.8-201ENST00000618339 1015 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 AC090971.5-201ENST00000621102 293 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 AL008636.1-201ENST00000625038 1018 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 AL606534.2-204ENST00000635008 178 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 MIR338-201ENST00000636369 67 ntBASIC1.13□□□□□ -2.23
SCN2AQ99250 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.13□□□□□ -2.23
SCN2AQ99250 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.12□□□□□ -2.23
SCN2AQ99250 RNU6-324P-201ENST00000363957 106 ntBASIC1.12□□□□□ -2.23
SCN2AQ99250 RNU6-203P-201ENST00000384038 104 ntBASIC1.12□□□□□ -2.23
SCN2AQ99250 RNU6-950P-201ENST00000384651 107 ntBASIC1.12□□□□□ -2.23
SCN2AQ99250 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.12□□□□□ -2.23
SCN2AQ99250 MIR548J-201ENST00000408833 112 ntBASIC1.12□□□□□ -2.23
SCN2AQ99250 RNA5SP475-201ENST00000410568 110 ntBASIC1.12□□□□□ -2.23
SCN2AQ99250 AC114482.1-201ENST00000418010 247 ntBASIC1.12□□□□□ -2.23
SCN2AQ99250 MTCO2P27-201ENST00000420740 428 ntBASIC1.12□□□□□ -2.23
SCN2AQ99250 RAB28P5-201ENST00000427490 651 ntBASIC1.12□□□□□ -2.23
SCN2AQ99250 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.12□□□□□ -2.23
SCN2AQ99250 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.12□□□□□ -2.23
SCN2AQ99250 MIR3937-201ENST00000580135 106 ntBASIC1.12□□□□□ -2.23
SCN2AQ99250 AC022217.4-201ENST00000604389 163 ntBASIC1.12□□□□□ -2.23
SCN2AQ99250 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.12□□□□□ -2.23
SCN2AQ99250 AL161722.3-201ENST00000605789 2983 ntBASIC1.12□□□□□ -2.23
SCN2AQ99250 SNORD115-30-201ENST00000364117 82 ntBASIC1.11□□□□□ -2.23
SCN2AQ99250 Y_RNA.303-201ENST00000364998 94 ntBASIC1.11□□□□□ -2.23
SCN2AQ99250 RNU6-890P-201ENST00000384121 107 ntBASIC1.11□□□□□ -2.23
SCN2AQ99250 RNU6-699P-201ENST00000517081 110 ntBASIC1.11□□□□□ -2.23
SCN2AQ99250 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.11□□□□□ -2.23
SCN2AQ99250 MIR4422-201ENST00000581938 83 ntBASIC1.11□□□□□ -2.23
SCN2AQ99250 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.11□□□□□ -2.23
SCN2AQ99250 Y_RNA.315-201ENST00000365117 102 ntBASIC1.11□□□□□ -2.23
SCN2AQ99250 RNU6-342P-201ENST00000384521 104 ntBASIC1.11□□□□□ -2.23
SCN2AQ99250 MIR628-201ENST00000385229 95 ntBASIC1.11□□□□□ -2.23
SCN2AQ99250 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.11□□□□□ -2.23
SCN2AQ99250 RPS29P28-201ENST00000446439 141 ntBASIC1.11□□□□□ -2.23
SCN2AQ99250 U8.22-201ENST00000459141 133 ntBASIC1.11□□□□□ -2.23
SCN2AQ99250 RNA5SP57-201ENST00000459463 123 ntBASIC1.11□□□□□ -2.23
SCN2AQ99250 RPS29P1-201ENST00000465274 159 ntBASIC1.11□□□□□ -2.23
SCN2AQ99250 RNU6-507P-201ENST00000516045 100 ntBASIC1.11□□□□□ -2.23
SCN2AQ99250 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.11□□□□□ -2.23
SCN2AQ99250 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.11□□□□□ -2.23
SCN2AQ99250 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.1□□□□□ -2.23
SCN2AQ99250 RNU4-79P-201ENST00000362764 141 ntBASIC1.1□□□□□ -2.23
SCN2AQ99250 RNU6-1040P-201ENST00000383974 107 ntBASIC1.1□□□□□ -2.23
SCN2AQ99250 RNU6-101P-201ENST00000410323 104 ntBASIC1.1□□□□□ -2.23
SCN2AQ99250 SUMO1P2-201ENST00000452524 304 ntBASIC1.1□□□□□ -2.23
SCN2AQ99250 HMGN1P13-201ENST00000505795 138 ntBASIC1.1□□□□□ -2.23
SCN2AQ99250 AC025647.1-201ENST00000517879 253 ntBASIC1.1□□□□□ -2.23
SCN2AQ99250 AC136443.5-201ENST00000603741 370 ntBASIC1.1□□□□□ -2.23
SCN2AQ99250 U6.108-201ENST00000637764 58 ntBASIC1.1□□□□□ -2.23
SCN2AQ99250 AC091812.1-201ENST00000432235 1948 ntBASIC1.1□□□□□ -2.23
SCN2AQ99250 RNU4-38P-201ENST00000364472 129 ntBASIC1.1□□□□□ -2.23
SCN2AQ99250 MIR548B-201ENST00000385247 97 ntBASIC1.1□□□□□ -2.23
SCN2AQ99250 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.1□□□□□ -2.23
SCN2AQ99250 SNORA48.1-201ENST00000390879 135 ntBASIC1.1□□□□□ -2.23
SCN2AQ99250 SNORA40.6-201ENST00000391153 128 ntBASIC1.1□□□□□ -2.23
SCN2AQ99250 AC016909.1-201ENST00000415916 166 ntBASIC1.1□□□□□ -2.23
SCN2AQ99250 JTBP1-201ENST00000441314 247 ntBASIC1.1□□□□□ -2.23
SCN2AQ99250 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.1□□□□□ -2.23
SCN2AQ99250 RNU6-1012P-201ENST00000516606 109 ntBASIC1.1□□□□□ -2.23
SCN2AQ99250 AC023442.1-201ENST00000531247 422 ntBASIC1.1□□□□□ -2.23
SCN2AQ99250 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.1□□□□□ -2.23
SCN2AQ99250 VN1R91P-201ENST00000594377 169 ntBASIC1.1□□□□□ -2.23
SCN2AQ99250 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.09□□□□□ -2.23
SCN2AQ99250 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
SCN2AQ99250 Y_RNA.39-201ENST00000362620 98 ntBASIC1.09□□□□□ -2.24
SCN2AQ99250 RNA5SP361-201ENST00000362686 118 ntBASIC1.09□□□□□ -2.24
SCN2AQ99250 MIR30A-201ENST00000385092 71 ntBASIC1.09□□□□□ -2.24
SCN2AQ99250 SDAD1P3-201ENST00000427380 333 ntBASIC1.09□□□□□ -2.24
SCN2AQ99250 RPL26P26-201ENST00000480251 434 ntBASIC1.09□□□□□ -2.24
SCN2AQ99250 MIR4709-201ENST00000577272 72 ntBASIC1.09□□□□□ -2.24
SCN2AQ99250 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.09□□□□□ -2.24
SCN2AQ99250 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.09□□□□□ -2.24
SCN2AQ99250 Y_RNA.48-201ENST00000362710 103 ntBASIC1.08□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 119.1 ms