Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.23□□□□□ -1.89
USHBP1Q8N6Y0 WARS-244ENST00000627608 123 ntTSL 5 BASIC3.23□□□□□ -1.89
USHBP1Q8N6Y0 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
USHBP1Q8N6Y0 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 MIR1289-2-201ENST00000408360 111 ntBASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 MIR1283-1-201ENST00000408494 87 ntBASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 MIR1294-201ENST00000408503 142 ntBASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 RNA5SP425-201ENST00000410336 112 ntBASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 AC244505.4-201ENST00000434905 287 ntBASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 AC008267.6-201ENST00000441664 139 ntBASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 SSXP5-201ENST00000443473 287 ntBASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 HSPE1P13-201ENST00000451143 297 ntBASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 RNU7-14P-201ENST00000459331 62 ntBASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 RNU7-57P-201ENST00000459540 60 ntBASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 RNA5SP112-201ENST00000515937 99 ntBASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 AC090517.3-201ENST00000625170 141 ntBASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.22□□□□□ -1.89
USHBP1Q8N6Y0 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.21□□□□□ -1.89
USHBP1Q8N6Y0 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.21□□□□□ -1.9
USHBP1Q8N6Y0 MIR367-201ENST00000362299 68 ntBASIC3.21□□□□□ -1.9
USHBP1Q8N6Y0 RNU6-199P-201ENST00000362954 107 ntBASIC3.21□□□□□ -1.9
USHBP1Q8N6Y0 Y_RNA.172-201ENST00000363765 102 ntBASIC3.21□□□□□ -1.9
USHBP1Q8N6Y0 RNA5SP139-201ENST00000364340 117 ntBASIC3.21□□□□□ -1.9
USHBP1Q8N6Y0 Y_RNA.229-201ENST00000364347 113 ntBASIC3.21□□□□□ -1.9
USHBP1Q8N6Y0 MT-TT-201ENST00000387460 66 ntBASIC3.21□□□□□ -1.9
USHBP1Q8N6Y0 MIR873-201ENST00000401120 77 ntBASIC3.21□□□□□ -1.9
USHBP1Q8N6Y0 AL606845.1-201ENST00000404881 255 ntBASIC3.21□□□□□ -1.9
USHBP1Q8N6Y0 AC006461.1-201ENST00000412637 326 ntBASIC3.21□□□□□ -1.9
USHBP1Q8N6Y0 AL137159.1-201ENST00000452808 512 ntBASIC3.21□□□□□ -1.9
USHBP1Q8N6Y0 AC006483.1-201ENST00000487308 313 ntBASIC3.21□□□□□ -1.9
USHBP1Q8N6Y0 AC117454.1-201ENST00000491120 168 ntBASIC3.21□□□□□ -1.9
USHBP1Q8N6Y0 AC026436.1-201ENST00000510537 270 ntBASIC3.21□□□□□ -1.9
USHBP1Q8N6Y0 SNORA25.12-201ENST00000516202 82 ntBASIC3.21□□□□□ -1.9
USHBP1Q8N6Y0 MIR4648-201ENST00000580107 72 ntBASIC3.21□□□□□ -1.9
USHBP1Q8N6Y0 MIR4753-201ENST00000585119 83 ntBASIC3.21□□□□□ -1.9
USHBP1Q8N6Y0 AL159152.1-201ENST00000635019 2587 ntBASIC3.21□□□□□ -1.9
USHBP1Q8N6Y0 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
USHBP1Q8N6Y0 Y_RNA.81-201ENST00000362997 102 ntBASIC3.2□□□□□ -1.9
USHBP1Q8N6Y0 SNORA20B-201ENST00000384220 132 ntBASIC3.2□□□□□ -1.9
USHBP1Q8N6Y0 AL355796.1-201ENST00000406706 323 ntBASIC3.2□□□□□ -1.9
USHBP1Q8N6Y0 Y_RNA.629-201ENST00000411368 105 ntBASIC3.2□□□□□ -1.9
USHBP1Q8N6Y0 AC007064.1-201ENST00000412238 351 ntBASIC3.2□□□□□ -1.9
USHBP1Q8N6Y0 MTND4LP9-201ENST00000427694 174 ntBASIC3.2□□□□□ -1.9
USHBP1Q8N6Y0 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.2□□□□□ -1.9
USHBP1Q8N6Y0 RPL23AP7-203ENST00000449021 469 ntBASIC3.2□□□□□ -1.9
USHBP1Q8N6Y0 AC114982.1-201ENST00000469402 321 ntBASIC3.2□□□□□ -1.9
USHBP1Q8N6Y0 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC3.2□□□□□ -1.9
USHBP1Q8N6Y0 RNU7-115P-201ENST00000516433 55 ntBASIC3.2□□□□□ -1.9
USHBP1Q8N6Y0 AC068647.2-201ENST00000637380 353 ntBASIC3.2□□□□□ -1.9
USHBP1Q8N6Y0 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.2□□□□□ -1.9
USHBP1Q8N6Y0 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
USHBP1Q8N6Y0 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
USHBP1Q8N6Y0 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.2□□□□□ -1.9
USHBP1Q8N6Y0 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
USHBP1Q8N6Y0 RNU6-271P-201ENST00000363858 105 ntBASIC3.19□□□□□ -1.9
USHBP1Q8N6Y0 RNA5SP456-201ENST00000364002 114 ntBASIC3.19□□□□□ -1.9
USHBP1Q8N6Y0 RNU6-728P-201ENST00000365375 104 ntBASIC3.19□□□□□ -1.9
USHBP1Q8N6Y0 MIR764-201ENST00000390811 85 ntBASIC3.19□□□□□ -1.9
USHBP1Q8N6Y0 SNORA36B-201ENST00000410438 131 ntBASIC3.19□□□□□ -1.9
USHBP1Q8N6Y0 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.19□□□□□ -1.9
USHBP1Q8N6Y0 AC010598.1-201ENST00000510378 103 ntBASIC3.19□□□□□ -1.9
USHBP1Q8N6Y0 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.19□□□□□ -1.9
USHBP1Q8N6Y0 RNU6-1337P-201ENST00000516525 95 ntBASIC3.19□□□□□ -1.9
USHBP1Q8N6Y0 MIR548AY-201ENST00000617669 107 ntBASIC3.19□□□□□ -1.9
USHBP1Q8N6Y0 snoZ196.1-201ENST00000625269 89 ntBASIC3.19□□□□□ -1.9
USHBP1Q8N6Y0 MIR3658-201ENST00000636291 56 ntBASIC3.19□□□□□ -1.9
USHBP1Q8N6Y0 RNU6-486P-201ENST00000363116 107 ntBASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 Y_RNA.124-201ENST00000363339 93 ntBASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 RNU6-643P-201ENST00000384018 107 ntBASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 RNU6-1083P-201ENST00000384022 107 ntBASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 RNU6-1323P-201ENST00000384025 107 ntBASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 MIR15B-201ENST00000385045 98 ntBASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 MIR504-201ENST00000385065 83 ntBASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 SNORD37.2-201ENST00000391075 66 ntBASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 RNU6-383P-201ENST00000410864 94 ntBASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 RN7SKP192-201ENST00000411291 327 ntBASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 AC003685.2-201ENST00000422795 395 ntBASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 AC104389.3-201ENST00000445629 235 ntBASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 SNORD65B-201ENST00000459126 73 ntBASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 RPS29P12-201ENST00000460178 152 ntBASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 MIR449C-201ENST00000516047 92 ntBASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 AC112693.2-201ENST00000556538 232 ntBASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 MIR4769-201ENST00000584126 77 ntBASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 MIR4506-201ENST00000584693 77 ntBASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 AC093010.3-201ENST00000570269 15214 ntBASIC3.18□□□□□ -1.9
USHBP1Q8N6Y0 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
USHBP1Q8N6Y0 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
USHBP1Q8N6Y0 SNORA27.1-201ENST00000362604 124 ntBASIC3.17□□□□□ -1.9
USHBP1Q8N6Y0 MIR539-201ENST00000365690 78 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms