Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RNU6-831P-201ENST00000384548 107 ntBASIC1.04□□□□□ -2.24
HDDC3Q8N4P3 AL355796.1-201ENST00000406706 323 ntBASIC1.04□□□□□ -2.24
HDDC3Q8N4P3 RNA5SP118-201ENST00000410385 109 ntBASIC1.04□□□□□ -2.24
HDDC3Q8N4P3 AC063976.4-201ENST00000421971 163 ntBASIC1.04□□□□□ -2.24
HDDC3Q8N4P3 AC018865.2-201ENST00000423631 129 ntBASIC1.04□□□□□ -2.24
HDDC3Q8N4P3 RPS29P28-201ENST00000446439 141 ntBASIC1.04□□□□□ -2.24
HDDC3Q8N4P3 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.04□□□□□ -2.24
HDDC3Q8N4P3 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.04□□□□□ -2.24
HDDC3Q8N4P3 RNU7-12P-201ENST00000516030 62 ntBASIC1.04□□□□□ -2.24
HDDC3Q8N4P3 RNU6-1088P-201ENST00000516850 104 ntBASIC1.04□□□□□ -2.24
HDDC3Q8N4P3 CBX3P8-201ENST00000532412 525 ntBASIC1.04□□□□□ -2.24
HDDC3Q8N4P3 AL121579.1-201ENST00000555129 305 ntBASIC1.04□□□□□ -2.24
HDDC3Q8N4P3 MIR4790-201ENST00000577799 79 ntBASIC1.04□□□□□ -2.24
HDDC3Q8N4P3 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
HDDC3Q8N4P3 Y_RNA.89-201ENST00000363031 102 ntBASIC1.03□□□□□ -2.24
HDDC3Q8N4P3 RNU4-12P-201ENST00000365233 139 ntBASIC1.03□□□□□ -2.24
HDDC3Q8N4P3 MIR653-201ENST00000385279 96 ntBASIC1.03□□□□□ -2.24
HDDC3Q8N4P3 SNORD41-201ENST00000386967 70 ntBASIC1.03□□□□□ -2.24
HDDC3Q8N4P3 U8.16-201ENST00000391279 133 ntBASIC1.03□□□□□ -2.24
HDDC3Q8N4P3 RNU6-1054P-201ENST00000411293 104 ntBASIC1.03□□□□□ -2.24
HDDC3Q8N4P3 AC245047.7-201ENST00000440265 293 ntBASIC1.03□□□□□ -2.24
HDDC3Q8N4P3 MTND1P17-201ENST00000448961 204 ntBASIC1.03□□□□□ -2.24
HDDC3Q8N4P3 RNU7-87P-201ENST00000459343 62 ntBASIC1.03□□□□□ -2.24
HDDC3Q8N4P3 RNA5SP20-201ENST00000515976 84 ntBASIC1.03□□□□□ -2.24
HDDC3Q8N4P3 RNU6-341P-201ENST00000516973 96 ntBASIC1.03□□□□□ -2.24
HDDC3Q8N4P3 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.03□□□□□ -2.24
HDDC3Q8N4P3 AP002004.2-201ENST00000531656 154 ntBASIC1.03□□□□□ -2.24
HDDC3Q8N4P3 MIR4661-201ENST00000582720 75 ntBASIC1.03□□□□□ -2.24
HDDC3Q8N4P3 AC005730.3-201ENST00000583067 366 ntBASIC1.03□□□□□ -2.24
HDDC3Q8N4P3 AL020996.3-201ENST00000606617 222 ntBASIC1.03□□□□□ -2.24
HDDC3Q8N4P3 MIR6857-201ENST00000613267 93 ntBASIC1.03□□□□□ -2.24
HDDC3Q8N4P3 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.03□□□□□ -2.24
HDDC3Q8N4P3 AL391516.1-201ENST00000554380 2449 ntBASIC1.03□□□□□ -2.25
HDDC3Q8N4P3 Y_RNA.295-201ENST00000364918 102 ntBASIC1.02□□□□□ -2.25
HDDC3Q8N4P3 SNORA2.2-201ENST00000365473 135 ntBASIC1.02□□□□□ -2.25
HDDC3Q8N4P3 RNU6-842P-201ENST00000384269 107 ntBASIC1.02□□□□□ -2.25
HDDC3Q8N4P3 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.02□□□□□ -2.25
HDDC3Q8N4P3 AC093850.1-201ENST00000454121 251 ntBASIC1.02□□□□□ -2.25
HDDC3Q8N4P3 RNA5SP436-201ENST00000516020 115 ntBASIC1.02□□□□□ -2.25
HDDC3Q8N4P3 RNU6-1278P-201ENST00000516130 107 ntBASIC1.02□□□□□ -2.25
HDDC3Q8N4P3 RNU6-917P-201ENST00000516294 104 ntBASIC1.02□□□□□ -2.25
HDDC3Q8N4P3 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.02□□□□□ -2.25
HDDC3Q8N4P3 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.01□□□□□ -2.25
HDDC3Q8N4P3 Y_RNA.450-201ENST00000384198 113 ntBASIC1.01□□□□□ -2.25
HDDC3Q8N4P3 MIR19B1-201ENST00000384829 87 ntBASIC1.01□□□□□ -2.25
HDDC3Q8N4P3 SNORD12-201ENST00000391002 90 ntBASIC1.01□□□□□ -2.25
HDDC3Q8N4P3 RNU6-700P-201ENST00000391043 107 ntBASIC1.01□□□□□ -2.25
HDDC3Q8N4P3 RNA5SP482-201ENST00000391269 118 ntBASIC1.01□□□□□ -2.25
HDDC3Q8N4P3 SNORD5.1-201ENST00000458800 75 ntBASIC1.01□□□□□ -2.25
HDDC3Q8N4P3 OR9P1P-201ENST00000496431 281 ntBASIC1.01□□□□□ -2.25
HDDC3Q8N4P3 AC022493.2-201ENST00000506122 481 ntBASIC1.01□□□□□ -2.25
HDDC3Q8N4P3 RNU6-1291P-201ENST00000516591 104 ntBASIC1.01□□□□□ -2.25
HDDC3Q8N4P3 AC125232.2-201ENST00000592457 143 ntBASIC1.01□□□□□ -2.25
HDDC3Q8N4P3 AC080078.2-201ENST00000603766 501 ntBASIC1.01□□□□□ -2.25
HDDC3Q8N4P3 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.01□□□□□ -2.25
HDDC3Q8N4P3 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC1.01□□□□□ -2.25
HDDC3Q8N4P3 AC005592.1-201ENST00000566527 1640 ntBASIC1□□□□□ -2.25
HDDC3Q8N4P3 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
HDDC3Q8N4P3 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1□□□□□ -2.25
HDDC3Q8N4P3 SNORA1B-201ENST00000362535 133 ntBASIC1□□□□□ -2.25
HDDC3Q8N4P3 SNORA27.1-201ENST00000362604 124 ntBASIC1□□□□□ -2.25
HDDC3Q8N4P3 RNU6-879P-201ENST00000364328 108 ntBASIC1□□□□□ -2.25
HDDC3Q8N4P3 RNU4-38P-201ENST00000364472 129 ntBASIC1□□□□□ -2.25
HDDC3Q8N4P3 MIR190B-201ENST00000401119 79 ntBASIC1□□□□□ -2.25
HDDC3Q8N4P3 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1□□□□□ -2.25
HDDC3Q8N4P3 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1□□□□□ -2.25
HDDC3Q8N4P3 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1□□□□□ -2.25
HDDC3Q8N4P3 CYP3A137P-201ENST00000562436 69 ntBASIC1□□□□□ -2.25
HDDC3Q8N4P3 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1□□□□□ -2.25
HDDC3Q8N4P3 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1□□□□□ -2.25
HDDC3Q8N4P3 AC068790.6-201ENST00000602558 258 ntBASIC1□□□□□ -2.25
HDDC3Q8N4P3 AC104260.1-201ENST00000616660 539 ntBASIC1□□□□□ -2.25
HDDC3Q8N4P3 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1□□□□□ -2.25
HDDC3Q8N4P3 RNU1-133P-201ENST00000364867 167 ntBASIC0.99□□□□□ -2.25
HDDC3Q8N4P3 SNORA22-201ENST00000383907 134 ntBASIC0.99□□□□□ -2.25
HDDC3Q8N4P3 Y_RNA.498-201ENST00000384460 102 ntBASIC0.99□□□□□ -2.25
HDDC3Q8N4P3 SNORA22C-201ENST00000384614 134 ntBASIC0.99□□□□□ -2.25
HDDC3Q8N4P3 Y_RNA.554-201ENST00000384672 102 ntBASIC0.99□□□□□ -2.25
HDDC3Q8N4P3 MIR329-1-201ENST00000385028 80 ntBASIC0.99□□□□□ -2.25
HDDC3Q8N4P3 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.99□□□□□ -2.25
HDDC3Q8N4P3 EIF1P2-201ENST00000428233 350 ntBASIC0.99□□□□□ -2.25
HDDC3Q8N4P3 AC005534.2-201ENST00000431047 433 ntBASIC0.99□□□□□ -2.25
HDDC3Q8N4P3 AC104332.1-201ENST00000440471 797 ntBASIC0.99□□□□□ -2.25
HDDC3Q8N4P3 UBE2V1P7-201ENST00000446395 340 ntBASIC0.99□□□□□ -2.25
HDDC3Q8N4P3 AC233266.1-201ENST00000454518 96 ntBASIC0.99□□□□□ -2.25
HDDC3Q8N4P3 AC093534.1-201ENST00000504977 132 ntBASIC0.99□□□□□ -2.25
HDDC3Q8N4P3 SCARNA16.2-201ENST00000516520 172 ntBASIC0.99□□□□□ -2.25
HDDC3Q8N4P3 RN7SKP49-201ENST00000516675 260 ntBASIC0.99□□□□□ -2.25
HDDC3Q8N4P3 AC242852.1-201ENST00000612151 96 ntBASIC0.99□□□□□ -2.25
HDDC3Q8N4P3 AC244015.1-201ENST00000622301 99 ntBASIC0.99□□□□□ -2.25
HDDC3Q8N4P3 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
HDDC3Q8N4P3 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.99□□□□□ -2.25
HDDC3Q8N4P3 SNORD114-24-201ENST00000365029 72 ntBASIC0.98□□□□□ -2.25
HDDC3Q8N4P3 Y_RNA.364-201ENST00000365532 101 ntBASIC0.98□□□□□ -2.25
HDDC3Q8N4P3 Y_RNA.436-201ENST00000384097 102 ntBASIC0.98□□□□□ -2.25
HDDC3Q8N4P3 SNORA80D-201ENST00000384488 135 ntBASIC0.98□□□□□ -2.25
HDDC3Q8N4P3 RNU6-1148P-201ENST00000410992 104 ntBASIC0.98□□□□□ -2.25
HDDC3Q8N4P3 POLR2J4-204ENST00000418424 324 ntBASIC0.98□□□□□ -2.25
HDDC3Q8N4P3 RNU6-1132P-201ENST00000459214 107 ntBASIC0.98□□□□□ -2.25
HDDC3Q8N4P3 AC074133.1-201ENST00000515696 183 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 127.4 ms