Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 OOSP1P1-201ENST00000423265 274 ntBASIC2.53□□□□□ -2
VPS53Q5VIR6 AC024067.1-201ENST00000426199 223 ntBASIC2.53□□□□□ -2
VPS53Q5VIR6 AC245102.2-201ENST00000448956 180 ntBASIC2.53□□□□□ -2
VPS53Q5VIR6 RNU7-57P-201ENST00000459540 60 ntBASIC2.53□□□□□ -2
VPS53Q5VIR6 RPS29P21-201ENST00000496272 170 ntBASIC2.53□□□□□ -2
VPS53Q5VIR6 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC2.53□□□□□ -2
VPS53Q5VIR6 RNU6-191P-201ENST00000516295 94 ntBASIC2.53□□□□□ -2
VPS53Q5VIR6 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.53□□□□□ -2
VPS53Q5VIR6 MIR4529-201ENST00000578110 78 ntBASIC2.53□□□□□ -2
VPS53Q5VIR6 MIR4282-201ENST00000583613 67 ntBASIC2.53□□□□□ -2
VPS53Q5VIR6 MIR1248-201ENST00000629190 106 ntBASIC2.53□□□□□ -2
VPS53Q5VIR6 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.53□□□□□ -2
VPS53Q5VIR6 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
VPS53Q5VIR6 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.52□□□□□ -2.01
VPS53Q5VIR6 RNU4-80P-201ENST00000363200 141 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 Y_RNA.329-201ENST00000365209 107 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 SNORA70B-201ENST00000384210 135 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 MIR144-201ENST00000384886 86 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 AL031003.1-201ENST00000404229 172 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 RNU2-2P-201ENST00000410396 191 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 RNU2-48P-201ENST00000410694 191 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 RNU2-64P-201ENST00000411315 191 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 COX6CP14-201ENST00000469580 174 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 RNU2-34P-201ENST00000516534 121 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 RNU6-965P-201ENST00000516721 96 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 SNORA31.25-201ENST00000517242 134 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 DEFB117-201ENST00000602356 141 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 U2.15-201ENST00000611544 191 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 U2.16-201ENST00000613119 191 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 U2.12-201ENST00000613778 191 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 U2.20-201ENST00000613956 192 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 U2.9-201ENST00000615427 191 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 U2.11-201ENST00000616345 191 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 U2.2-201ENST00000616535 191 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 U2.3-201ENST00000617785 191 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 U2.19-201ENST00000618602 191 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 RNU2-1-201ENST00000618664 191 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 U2.6-201ENST00000619225 191 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 U2.5-201ENST00000619465 191 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 U2.10-201ENST00000620268 191 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 U6.115-201ENST00000636045 103 ntBASIC2.52□□□□□ -2.01
VPS53Q5VIR6 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.52□□□□□ -2.01
VPS53Q5VIR6 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.52□□□□□ -2.01
VPS53Q5VIR6 SNORD114-7-201ENST00000362520 77 ntBASIC2.51□□□□□ -2.01
VPS53Q5VIR6 Y_RNA.76-201ENST00000362931 109 ntBASIC2.51□□□□□ -2.01
VPS53Q5VIR6 Y_RNA.200-201ENST00000364018 102 ntBASIC2.51□□□□□ -2.01
VPS53Q5VIR6 Y_RNA.217-201ENST00000364214 105 ntBASIC2.51□□□□□ -2.01
VPS53Q5VIR6 RNA5SP37-201ENST00000365420 130 ntBASIC2.51□□□□□ -2.01
VPS53Q5VIR6 Y_RNA.785-201ENST00000384290 109 ntBASIC2.51□□□□□ -2.01
VPS53Q5VIR6 RNU2-61P-201ENST00000411069 191 ntBASIC2.51□□□□□ -2.01
VPS53Q5VIR6 HMGN2P18-201ENST00000450680 270 ntBASIC2.51□□□□□ -2.01
VPS53Q5VIR6 SNORD2.1-201ENST00000458762 69 ntBASIC2.51□□□□□ -2.01
VPS53Q5VIR6 Y_RNA.641-201ENST00000459414 105 ntBASIC2.51□□□□□ -2.01
VPS53Q5VIR6 RNU6-221P-201ENST00000459541 99 ntBASIC2.51□□□□□ -2.01
VPS53Q5VIR6 AC079804.2-201ENST00000490376 200 ntBASIC2.51□□□□□ -2.01
VPS53Q5VIR6 RNU6-138P-201ENST00000515952 107 ntBASIC2.51□□□□□ -2.01
VPS53Q5VIR6 AC130289.1-201ENST00000577321 73 ntBASIC2.51□□□□□ -2.01
VPS53Q5VIR6 MIR3145-201ENST00000580727 82 ntBASIC2.51□□□□□ -2.01
VPS53Q5VIR6 MIR3945-201ENST00000581853 98 ntBASIC2.51□□□□□ -2.01
VPS53Q5VIR6 snoZ196.1-201ENST00000625269 89 ntBASIC2.51□□□□□ -2.01
VPS53Q5VIR6 AP000553.5-201ENST00000641933 54 ntBASIC2.51□□□□□ -2.01
VPS53Q5VIR6 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.51□□□□□ -2.01
VPS53Q5VIR6 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
VPS53Q5VIR6 AL159152.1-201ENST00000635019 2587 ntBASIC2.5□□□□□ -2.01
VPS53Q5VIR6 Y_RNA.122-201ENST00000363331 96 ntBASIC2.5□□□□□ -2.01
VPS53Q5VIR6 RNU6-324P-201ENST00000363957 106 ntBASIC2.5□□□□□ -2.01
VPS53Q5VIR6 RNU6-438P-201ENST00000365561 103 ntBASIC2.5□□□□□ -2.01
VPS53Q5VIR6 MT-TR-201ENST00000387439 65 ntBASIC2.5□□□□□ -2.01
VPS53Q5VIR6 Y_RNA.590-201ENST00000410140 107 ntBASIC2.5□□□□□ -2.01
VPS53Q5VIR6 SRIP3-201ENST00000413200 219 ntBASIC2.5□□□□□ -2.01
VPS53Q5VIR6 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.5□□□□□ -2.01
VPS53Q5VIR6 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.5□□□□□ -2.01
VPS53Q5VIR6 AC090255.1-201ENST00000495779 349 ntBASIC2.5□□□□□ -2.01
VPS53Q5VIR6 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
VPS53Q5VIR6 RNU6-948P-201ENST00000516374 107 ntBASIC2.5□□□□□ -2.01
VPS53Q5VIR6 RNA5SP490-201ENST00000517141 136 ntBASIC2.5□□□□□ -2.01
VPS53Q5VIR6 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.5□□□□□ -2.01
VPS53Q5VIR6 MIR6840-201ENST00000611937 71 ntBASIC2.5□□□□□ -2.01
VPS53Q5VIR6 AC022202.1-201ENST00000613515 211 ntBASIC2.5□□□□□ -2.01
VPS53Q5VIR6 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
VPS53Q5VIR6 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.5□□□□□ -2.01
VPS53Q5VIR6 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
VPS53Q5VIR6 RNU6-1289P-201ENST00000384431 106 ntBASIC2.49□□□□□ -2.01
VPS53Q5VIR6 RNU6-1235P-201ENST00000384559 107 ntBASIC2.49□□□□□ -2.01
VPS53Q5VIR6 MIR29C-201ENST00000385231 88 ntBASIC2.49□□□□□ -2.01
VPS53Q5VIR6 HMGN2P39-201ENST00000398005 273 ntBASIC2.49□□□□□ -2.01
VPS53Q5VIR6 MIR1298-201ENST00000408783 112 ntBASIC2.49□□□□□ -2.01
VPS53Q5VIR6 RNU6-710P-201ENST00000410424 105 ntBASIC2.49□□□□□ -2.01
VPS53Q5VIR6 PRELID3BP1-201ENST00000457142 540 ntBASIC2.49□□□□□ -2.01
VPS53Q5VIR6 RNU6-498P-201ENST00000459468 107 ntBASIC2.49□□□□□ -2.01
VPS53Q5VIR6 AC025033.1-201ENST00000463883 194 ntBASIC2.49□□□□□ -2.01
VPS53Q5VIR6 SNORA70.12-201ENST00000516084 153 ntBASIC2.49□□□□□ -2.01
VPS53Q5VIR6 IGKV3-31-201ENST00000523109 329 ntBASIC2.49□□□□□ -2.01
VPS53Q5VIR6 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.49□□□□□ -2.01
VPS53Q5VIR6 AC007229.1-201ENST00000590455 412 ntBASIC2.49□□□□□ -2.01
VPS53Q5VIR6 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.49□□□□□ -2.01
VPS53Q5VIR6 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.49□□□□□ -2.01
VPS53Q5VIR6 Y_RNA.332-201ENST00000365271 113 ntBASIC2.48□□□□□ -2.01
VPS53Q5VIR6 RNY4P28-201ENST00000365281 93 ntBASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms