Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AL162376.1-201ENST00000624117 175 ntBASIC-0.32□□□□□ -2.46
CHD9Q3L8U1 SNORD115-8-201ENST00000363856 82 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 SNORD115-38-201ENST00000365037 82 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 RNU6-298P-201ENST00000390888 96 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 RNU6-613P-201ENST00000410412 108 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 MTND1P32-201ENST00000433043 938 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 AC005042.3-201ENST00000453230 174 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 AC097462.1-201ENST00000514125 324 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 RNU7-41P-201ENST00000515917 61 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 RNU7-28P-201ENST00000516759 62 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 AP001372.4-201ENST00000524889 472 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 AC174048.1-201ENST00000603389 144 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 AC246785.4-201ENST00000605374 287 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 AC108747.1-201ENST00000609508 535 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 AL445523.1-201ENST00000451184 1362 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 Y_RNA.46-201ENST00000362695 102 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 RNU6-641P-201ENST00000384006 107 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 RNU6-127P-201ENST00000390897 107 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 RNU6-1093P-201ENST00000391194 107 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 FGFR1OP2P1-201ENST00000395943 500 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 ZNF736P1Y-201ENST00000440402 1276 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 AC004386.2-201ENST00000441858 148 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 MTND4P18-201ENST00000447010 465 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 RNU4-49P-201ENST00000516080 140 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 MIR6079-201ENST00000635807 62 ntBASIC-0.33□□□□□ -2.46
CHD9Q3L8U1 AC079781.2-201ENST00000446424 169 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 MTND1P17-201ENST00000448961 204 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 RNU6-1198P-201ENST00000516904 67 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 AP000753.3-201ENST00000604083 169 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 AC010999.1-201ENST00000611856 324 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 AL391099.1-201ENST00000624635 187 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 SNORD38B-202ENST00000625943 69 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 Y_RNA.267-201ENST00000364679 109 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 RNU6-1319P-201ENST00000390855 104 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 RNU6-747P-201ENST00000390928 104 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 RNU6-241P-201ENST00000391148 104 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 RNU6-447P-201ENST00000410293 104 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 RNU6-1118P-201ENST00000410382 104 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 RNU6-1076P-201ENST00000410397 104 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 RNU6-355P-201ENST00000410427 104 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 RNU6-791P-201ENST00000410467 104 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 RNU6-705P-201ENST00000410601 104 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 RNU6-1100P-201ENST00000410691 104 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 RNU6-860P-201ENST00000410860 104 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 RNU6-1217P-201ENST00000411276 104 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 RNU6-785P-201ENST00000411324 104 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 RNU7-62P-201ENST00000458856 62 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 AC025647.1-201ENST00000517879 253 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 MIR4263-201ENST00000584745 83 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 U6.90-201ENST00000614007 104 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 U6.70-201ENST00000620287 104 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 MIR499B-201ENST00000636498 73 ntBASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.34□□□□□ -2.46
CHD9Q3L8U1 SNORD68-201ENST00000363214 84 ntBASIC-0.35□□□□□ -2.46
CHD9Q3L8U1 SNORA2.2-201ENST00000365473 135 ntBASIC-0.35□□□□□ -2.46
CHD9Q3L8U1 SNORD83B-201ENST00000386745 93 ntBASIC-0.35□□□□□ -2.46
CHD9Q3L8U1 SNORD41-201ENST00000386967 70 ntBASIC-0.35□□□□□ -2.46
CHD9Q3L8U1 MIR208B-201ENST00000401172 77 ntBASIC-0.35□□□□□ -2.46
CHD9Q3L8U1 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC-0.35□□□□□ -2.46
CHD9Q3L8U1 RPS29P27-201ENST00000463711 170 ntBASIC-0.35□□□□□ -2.46
CHD9Q3L8U1 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.35□□□□□ -2.46
CHD9Q3L8U1 AL078596.1-201ENST00000624856 447 ntBASIC-0.35□□□□□ -2.46
CHD9Q3L8U1 Y_RNA.148-201ENST00000363557 117 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 RNU6-1240P-201ENST00000365155 104 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 RNU6-354P-201ENST00000383862 107 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 Y_RNA.432-201ENST00000384087 111 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 RNU6-610P-201ENST00000384264 107 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 RNU6-535P-201ENST00000384722 107 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 RPS29P13-201ENST00000402041 169 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 MED13P1-201ENST00000428342 171 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 CALM2P4-201ENST00000430810 426 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 AF186996.7-201ENST00000492781 209 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 AC107027.2-201ENST00000512197 115 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 AC026470.2-201ENST00000561492 181 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 MIR3118-1-201ENST00000581787 76 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 MIR4307-201ENST00000582802 84 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 AC103705.1-201ENST00000619013 241 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 Y_RNA.778-201ENST00000620203 90 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 MIRLET7C-201ENST00000362160 84 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 RNU6-792P-201ENST00000363490 107 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 Y_RNA.192-201ENST00000363977 102 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 Y_RNA.326-201ENST00000365176 113 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 SNORA75.1-201ENST00000391130 148 ntBASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC-0.35□□□□□ -2.47
CHD9Q3L8U1 AL353997.1-201ENST00000432936 108 ntBASIC-0.35□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 187.8 ms