Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 Y_RNA.267-201ENST00000364679 109 ntBASIC0.94□□□□□ -2.26
PKNOX1P55347 RNU6-117P-201ENST00000365415 107 ntBASIC0.94□□□□□ -2.26
PKNOX1P55347 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
PKNOX1P55347 Y_RNA.482-201ENST00000384377 111 ntBASIC0.94□□□□□ -2.26
PKNOX1P55347 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC0.94□□□□□ -2.26
PKNOX1P55347 RNU5A-5P-201ENST00000411054 116 ntBASIC0.94□□□□□ -2.26
PKNOX1P55347 MTND1P4-201ENST00000435196 415 ntBASIC0.94□□□□□ -2.26
PKNOX1P55347 UBE2V1P7-201ENST00000446395 340 ntBASIC0.94□□□□□ -2.26
PKNOX1P55347 AC048334.1-201ENST00000477975 159 ntBASIC0.94□□□□□ -2.26
PKNOX1P55347 SNORA40.9-201ENST00000515895 93 ntBASIC0.94□□□□□ -2.26
PKNOX1P55347 SNORA31.2-201ENST00000516019 134 ntBASIC0.94□□□□□ -2.26
PKNOX1P55347 SCARNA16.2-201ENST00000516520 172 ntBASIC0.94□□□□□ -2.26
PKNOX1P55347 RNU6-1291P-201ENST00000516591 104 ntBASIC0.94□□□□□ -2.26
PKNOX1P55347 RNU2-56P-201ENST00000516826 190 ntBASIC0.94□□□□□ -2.26
PKNOX1P55347 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.94□□□□□ -2.26
PKNOX1P55347 RPL21P9-201ENST00000556149 474 ntBASIC0.94□□□□□ -2.26
PKNOX1P55347 AP000942.3-201ENST00000603702 160 ntBASIC0.94□□□□□ -2.26
PKNOX1P55347 GHRLOS.1-201ENST00000610995 70 ntBASIC0.94□□□□□ -2.26
PKNOX1P55347 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
PKNOX1P55347 MIRLET7C-201ENST00000362160 84 ntBASIC0.93□□□□□ -2.26
PKNOX1P55347 Y_RNA.498-201ENST00000384460 102 ntBASIC0.93□□□□□ -2.26
PKNOX1P55347 RNU6-376P-201ENST00000384731 106 ntBASIC0.93□□□□□ -2.26
PKNOX1P55347 RNU6-482P-201ENST00000391068 107 ntBASIC0.93□□□□□ -2.26
PKNOX1P55347 RPL23AP36-201ENST00000413895 458 ntBASIC0.93□□□□□ -2.26
PKNOX1P55347 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.93□□□□□ -2.26
PKNOX1P55347 AC092423.1-201ENST00000430165 186 ntBASIC0.93□□□□□ -2.26
PKNOX1P55347 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.93□□□□□ -2.26
PKNOX1P55347 AC093850.1-201ENST00000454121 251 ntBASIC0.93□□□□□ -2.26
PKNOX1P55347 NDUFAF4P4-201ENST00000454883 502 ntBASIC0.93□□□□□ -2.26
PKNOX1P55347 RNU6-625P-201ENST00000459412 107 ntBASIC0.93□□□□□ -2.26
PKNOX1P55347 AC116353.2-201ENST00000505332 712 ntBASIC0.93□□□□□ -2.26
PKNOX1P55347 AC105758.1-201ENST00000506038 399 ntBASIC0.93□□□□□ -2.26
PKNOX1P55347 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.93□□□□□ -2.26
PKNOX1P55347 AP002004.2-201ENST00000531656 154 ntBASIC0.93□□□□□ -2.26
PKNOX1P55347 AC090049.2-201ENST00000550377 109 ntBASIC0.93□□□□□ -2.26
PKNOX1P55347 MIR1244-1-201ENST00000612829 85 ntBASIC0.93□□□□□ -2.26
PKNOX1P55347 MIR1244-3-201ENST00000635744 85 ntBASIC0.93□□□□□ -2.26
PKNOX1P55347 MIR1244-2-201ENST00000636449 85 ntBASIC0.93□□□□□ -2.26
PKNOX1P55347 MIR3674-201ENST00000636576 68 ntBASIC0.93□□□□□ -2.26
PKNOX1P55347 MIR1244-4-202ENST00000636813 85 ntBASIC0.93□□□□□ -2.26
PKNOX1P55347 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.93□□□□□ -2.26
PKNOX1P55347 Y_RNA.72-201ENST00000362894 103 ntBASIC0.92□□□□□ -2.26
PKNOX1P55347 RNU6-1187P-201ENST00000364771 110 ntBASIC0.92□□□□□ -2.26
PKNOX1P55347 MIR873-201ENST00000401120 77 ntBASIC0.92□□□□□ -2.26
PKNOX1P55347 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.92□□□□□ -2.26
PKNOX1P55347 RNU6-1054P-201ENST00000411293 104 ntBASIC0.92□□□□□ -2.26
PKNOX1P55347 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC0.92□□□□□ -2.26
PKNOX1P55347 RNU6-1213P-201ENST00000517075 94 ntBASIC0.92□□□□□ -2.26
PKNOX1P55347 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.92□□□□□ -2.26
PKNOX1P55347 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC0.92□□□□□ -2.26
PKNOX1P55347 AC011712.1-201ENST00000588959 234 ntBASIC0.92□□□□□ -2.26
PKNOX1P55347 AL117336.2-201ENST00000602435 335 ntBASIC0.92□□□□□ -2.26
PKNOX1P55347 AC092794.2-201ENST00000620933 563 ntBASIC0.92□□□□□ -2.26
PKNOX1P55347 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.92□□□□□ -2.26
PKNOX1P55347 RNU6-1301P-201ENST00000362724 104 ntBASIC0.91□□□□□ -2.26
PKNOX1P55347 RNU4-79P-201ENST00000362764 141 ntBASIC0.91□□□□□ -2.26
PKNOX1P55347 Y_RNA.363-201ENST00000365529 113 ntBASIC0.91□□□□□ -2.26
PKNOX1P55347 MIR562-201ENST00000384894 95 ntBASIC0.91□□□□□ -2.26
PKNOX1P55347 RNU11-5P-201ENST00000391216 129 ntBASIC0.91□□□□□ -2.26
PKNOX1P55347 SNORA75.4-201ENST00000391278 119 ntBASIC0.91□□□□□ -2.26
PKNOX1P55347 RNU4-14P-201ENST00000410858 122 ntBASIC0.91□□□□□ -2.26
PKNOX1P55347 FCF1P9-201ENST00000412546 282 ntBASIC0.91□□□□□ -2.26
PKNOX1P55347 FGF7P6-202ENST00000451282 293 ntBASIC0.91□□□□□ -2.26
PKNOX1P55347 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC0.91□□□□□ -2.26
PKNOX1P55347 RNU6-1278P-201ENST00000516130 107 ntBASIC0.91□□□□□ -2.26
PKNOX1P55347 RNU7-28P-201ENST00000516759 62 ntBASIC0.91□□□□□ -2.26
PKNOX1P55347 RNU7-30P-201ENST00000516835 62 ntBASIC0.91□□□□□ -2.26
PKNOX1P55347 SNORA70.22-201ENST00000517160 124 ntBASIC0.91□□□□□ -2.26
PKNOX1P55347 MIR6715A-201ENST00000615929 79 ntBASIC0.91□□□□□ -2.26
PKNOX1P55347 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC0.91□□□□□ -2.26
PKNOX1P55347 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.91□□□□□ -2.26
PKNOX1P55347 AC127459.3-201ENST00000624328 466 ntBASIC0.91□□□□□ -2.26
PKNOX1P55347 Y_RNA.140-201ENST00000363474 103 ntBASIC0.9□□□□□ -2.27
PKNOX1P55347 Y_RNA.243-201ENST00000364481 109 ntBASIC0.9□□□□□ -2.27
PKNOX1P55347 Y_RNA.361-201ENST00000365515 120 ntBASIC0.9□□□□□ -2.27
PKNOX1P55347 RNU6-910P-201ENST00000390844 107 ntBASIC0.9□□□□□ -2.27
PKNOX1P55347 RNA5SP482-201ENST00000391269 118 ntBASIC0.9□□□□□ -2.27
PKNOX1P55347 SNORD12B-201ENST00000410433 91 ntBASIC0.9□□□□□ -2.27
PKNOX1P55347 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.9□□□□□ -2.27
PKNOX1P55347 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.9□□□□□ -2.27
PKNOX1P55347 AC245047.7-201ENST00000440265 293 ntBASIC0.9□□□□□ -2.27
PKNOX1P55347 RPL17P19-201ENST00000489069 552 ntBASIC0.9□□□□□ -2.27
PKNOX1P55347 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.9□□□□□ -2.27
PKNOX1P55347 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.9□□□□□ -2.27
PKNOX1P55347 AC022493.2-201ENST00000506122 481 ntBASIC0.9□□□□□ -2.27
PKNOX1P55347 RNU6-63P-201ENST00000516690 95 ntBASIC0.9□□□□□ -2.27
PKNOX1P55347 RNU6-99P-201ENST00000364721 107 ntBASIC0.89□□□□□ -2.27
PKNOX1P55347 SNORA2.2-201ENST00000365473 135 ntBASIC0.89□□□□□ -2.27
PKNOX1P55347 MIR19B1-201ENST00000384829 87 ntBASIC0.89□□□□□ -2.27
PKNOX1P55347 MIR222-201ENST00000384992 110 ntBASIC0.89□□□□□ -2.27
PKNOX1P55347 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
PKNOX1P55347 AL451046.2-201ENST00000403074 277 ntBASIC0.89□□□□□ -2.27
PKNOX1P55347 RNA5SP475-201ENST00000410568 110 ntBASIC0.89□□□□□ -2.27
PKNOX1P55347 Z98949.2-201ENST00000440996 144 ntBASIC0.89□□□□□ -2.27
PKNOX1P55347 RPL39P28-201ENST00000465655 155 ntBASIC0.89□□□□□ -2.27
PKNOX1P55347 MTND4P17-201ENST00000470444 350 ntBASIC0.89□□□□□ -2.27
PKNOX1P55347 UBL5P1-201ENST00000507979 193 ntBASIC0.89□□□□□ -2.27
PKNOX1P55347 RNU7-12P-201ENST00000516030 62 ntBASIC0.89□□□□□ -2.27
PKNOX1P55347 SNORA31.4-201ENST00000516049 129 ntBASIC0.89□□□□□ -2.27
PKNOX1P55347 RNU6-120P-201ENST00000516077 103 ntBASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms