Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MIR181A1-201ENST00000385026 110 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 U8.16-201ENST00000391279 133 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 AL355796.1-201ENST00000406706 323 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 RNU6-1001P-201ENST00000411265 100 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 RNU6-1054P-201ENST00000411293 104 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 MTCO3P19-201ENST00000415864 321 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 USP9YP16-201ENST00000430287 407 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 USP9YP30-201ENST00000430729 455 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 USP9YP23-201ENST00000455085 407 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.63□□□□□ -2.31
FOXA1P55317 AC018710.1-201ENST00000506509 158 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 AC046134.1-201ENST00000514454 666 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 RNU6-947P-201ENST00000516264 106 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 RNU6-917P-201ENST00000516294 104 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 Y_RNA.706-201ENST00000516933 99 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 RNU7-172P-201ENST00000517125 64 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 AC093023.1-201ENST00000547375 507 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.63□□□□□ -2.31
FOXA1P55317 AC080078.2-201ENST00000603766 501 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 MIR6779-201ENST00000617283 64 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 MIR6835-201ENST00000621552 64 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 AC100810.6-201ENST00000638068 285 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 AC068700.1-201ENST00000565862 3754 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.62□□□□□ -2.31
FOXA1P55317 RNU4-24P-201ENST00000364565 139 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 Y_RNA.267-201ENST00000364679 109 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 Y_RNA.393-201ENST00000383936 102 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 MIR19B1-201ENST00000384829 87 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 AC245047.7-201ENST00000440265 293 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 Z83846.1-201ENST00000446798 265 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 AC093850.1-201ENST00000454121 251 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 AC091021.1-201ENST00000468051 388 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 OR9P1P-201ENST00000496431 281 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 RNU6-566P-201ENST00000516790 107 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 RNU1-54P-201ENST00000517181 120 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 AP003484.1-201ENST00000530974 250 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 AC090049.2-201ENST00000550377 109 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC0.62□□□□□ -2.31
FOXA1P55317 MIR4714-201ENST00000580728 77 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 AC125232.2-201ENST00000592457 143 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 AC068790.6-201ENST00000602558 258 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 AC100812.1-201ENST00000607622 580 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 MIR6128-201ENST00000615528 109 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 AC015540.1-201ENST00000615828 501 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.62□□□□□ -2.31
FOXA1P55317 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.62□□□□□ -2.31
FOXA1P55317 MTND5P16-201ENST00000460269 1703 ntBASIC0.61□□□□□ -2.31
FOXA1P55317 Y_RNA.9-201ENST00000362354 101 ntBASIC0.61□□□□□ -2.31
FOXA1P55317 RNY4P14-201ENST00000363656 96 ntBASIC0.61□□□□□ -2.31
FOXA1P55317 Y_RNA.363-201ENST00000365529 113 ntBASIC0.61□□□□□ -2.31
FOXA1P55317 Y_RNA.554-201ENST00000384672 102 ntBASIC0.61□□□□□ -2.31
FOXA1P55317 AL451046.2-201ENST00000403074 277 ntBASIC0.61□□□□□ -2.31
FOXA1P55317 ELOCP21-201ENST00000412558 336 ntBASIC0.61□□□□□ -2.31
FOXA1P55317 AC063976.4-201ENST00000421971 163 ntBASIC0.61□□□□□ -2.31
FOXA1P55317 MTND1P17-201ENST00000448961 204 ntBASIC0.61□□□□□ -2.31
FOXA1P55317 RPL39P39-201ENST00000455840 151 ntBASIC0.61□□□□□ -2.31
FOXA1P55317 SNORD5.1-201ENST00000458800 75 ntBASIC0.61□□□□□ -2.31
FOXA1P55317 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.61□□□□□ -2.31
FOXA1P55317 RNU6-322P-201ENST00000516010 103 ntBASIC0.61□□□□□ -2.31
FOXA1P55317 SCARNA16.2-201ENST00000516520 172 ntBASIC0.61□□□□□ -2.31
FOXA1P55317 RNU2-56P-201ENST00000516826 190 ntBASIC0.61□□□□□ -2.31
FOXA1P55317 AC004812.1-201ENST00000540773 146 ntBASIC0.61□□□□□ -2.31
FOXA1P55317 RPL21P9-201ENST00000556149 474 ntBASIC0.61□□□□□ -2.31
FOXA1P55317 AC091178.2-201ENST00000584401 117 ntBASIC0.61□□□□□ -2.31
FOXA1P55317 AL020996.3-201ENST00000606617 222 ntBASIC0.61□□□□□ -2.31
FOXA1P55317 AC005592.1-201ENST00000566527 1640 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 AC008163.1-202ENST00000636004 2889 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 SNORA1B-201ENST00000362535 133 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 Y_RNA.89-201ENST00000363031 102 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 RNU6-407P-201ENST00000365280 104 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 SNORA2.2-201ENST00000365473 135 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 RNU6-1264P-201ENST00000383891 107 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 RNU6-1013P-201ENST00000384180 107 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 MIR329-1-201ENST00000385028 80 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 RNU2-64P-201ENST00000411315 191 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.6□□□□□ -2.31
FOXA1P55317 AC009161.1-201ENST00000417306 376 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 AC018865.2-201ENST00000423631 129 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 EIF1P2-201ENST00000428233 350 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 AC002429.1-201ENST00000437672 148 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 UQCRBP2-201ENST00000447827 297 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 SNORD124-201ENST00000459577 104 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 RNA5SP20-201ENST00000515976 84 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 RNU7-12P-201ENST00000516030 62 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 SNORD79.1-201ENST00000516069 84 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 RNU6-341P-201ENST00000516973 96 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 AC090617.3-201ENST00000573670 475 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 AL357075.2-201ENST00000614906 189 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 MIR3662-201ENST00000637030 95 ntBASIC0.6□□□□□ -2.31
FOXA1P55317 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC0.6□□□□□ -2.31
FOXA1P55317 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.59□□□□□ -2.31
FOXA1P55317 AC073544.1-201ENST00000600110 1595 ntBASIC0.59□□□□□ -2.31
FOXA1P55317 SNORA27.1-201ENST00000362604 124 ntBASIC0.59□□□□□ -2.31
FOXA1P55317 Y_RNA.157-201ENST00000363638 102 ntBASIC0.59□□□□□ -2.31
FOXA1P55317 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.59□□□□□ -2.31
FOXA1P55317 RNU6-376P-201ENST00000384731 106 ntBASIC0.59□□□□□ -2.31
FOXA1P55317 MIR508-201ENST00000384857 115 ntBASIC0.59□□□□□ -2.31
FOXA1P55317 MIR100-201ENST00000385259 80 ntBASIC0.59□□□□□ -2.31
FOXA1P55317 SNORD12-201ENST00000391002 90 ntBASIC0.59□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms