Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 Y_RNA.516-201ENST00000384541 124 ntBASIC0.88□□□□□ -2.27
RFX3P48380 SNORD116-4-201ENST00000384733 96 ntBASIC0.88□□□□□ -2.27
RFX3P48380 MIR653-201ENST00000385279 96 ntBASIC0.88□□□□□ -2.27
RFX3P48380 RNU6-910P-201ENST00000390844 107 ntBASIC0.88□□□□□ -2.27
RFX3P48380 AC074085.1-201ENST00000413598 418 ntBASIC0.88□□□□□ -2.27
RFX3P48380 STAG3L5P-204ENST00000443759 179 ntBASIC0.88□□□□□ -2.27
RFX3P48380 RPS4XP11-201ENST00000446897 772 ntBASIC0.88□□□□□ -2.27
RFX3P48380 SUMO1P2-201ENST00000452524 304 ntBASIC0.88□□□□□ -2.27
RFX3P48380 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.88□□□□□ -2.27
RFX3P48380 RNU6-341P-201ENST00000516973 96 ntBASIC0.88□□□□□ -2.27
RFX3P48380 AC105029.1-201ENST00000520250 669 ntBASIC0.88□□□□□ -2.27
RFX3P48380 AC136932.1-201ENST00000574771 208 ntBASIC0.88□□□□□ -2.27
RFX3P48380 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.88□□□□□ -2.27
RFX3P48380 MIR6857-201ENST00000613267 93 ntBASIC0.88□□□□□ -2.27
RFX3P48380 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.88□□□□□ -2.27
RFX3P48380 AC104260.1-201ENST00000616660 539 ntBASIC0.88□□□□□ -2.27
RFX3P48380 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.87□□□□□ -2.27
RFX3P48380 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.87□□□□□ -2.27
RFX3P48380 Y_RNA.265-201ENST00000364677 108 ntBASIC0.87□□□□□ -2.27
RFX3P48380 RNU6-1187P-201ENST00000364771 110 ntBASIC0.87□□□□□ -2.27
RFX3P48380 Y_RNA.318-201ENST00000365131 97 ntBASIC0.87□□□□□ -2.27
RFX3P48380 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.87□□□□□ -2.27
RFX3P48380 RNU6-1215P-201ENST00000384441 102 ntBASIC0.87□□□□□ -2.27
RFX3P48380 AL355796.1-201ENST00000406706 323 ntBASIC0.87□□□□□ -2.27
RFX3P48380 MIR1277-201ENST00000408536 78 ntBASIC0.87□□□□□ -2.27
RFX3P48380 RNU6-1001P-201ENST00000411265 100 ntBASIC0.87□□□□□ -2.27
RFX3P48380 RNU6-1054P-201ENST00000411293 104 ntBASIC0.87□□□□□ -2.27
RFX3P48380 ELOCP21-201ENST00000412558 336 ntBASIC0.87□□□□□ -2.27
RFX3P48380 AC026782.1-201ENST00000512952 449 ntBASIC0.87□□□□□ -2.27
RFX3P48380 SNORA31.4-201ENST00000516049 129 ntBASIC0.87□□□□□ -2.27
RFX3P48380 Y_RNA.682-201ENST00000516457 100 ntBASIC0.87□□□□□ -2.27
RFX3P48380 AC027419.1-201ENST00000522976 328 ntBASIC0.87□□□□□ -2.27
RFX3P48380 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.87□□□□□ -2.27
RFX3P48380 AC090049.2-201ENST00000550377 109 ntBASIC0.87□□□□□ -2.27
RFX3P48380 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.87□□□□□ -2.27
RFX3P48380 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC0.87□□□□□ -2.27
RFX3P48380 AC125232.2-201ENST00000592457 143 ntBASIC0.87□□□□□ -2.27
RFX3P48380 MIR7111-201ENST00000619751 72 ntBASIC0.87□□□□□ -2.27
RFX3P48380 AC073544.1-201ENST00000600110 1595 ntBASIC0.87□□□□□ -2.27
RFX3P48380 MIR96-201ENST00000362288 78 ntBASIC0.86□□□□□ -2.27
RFX3P48380 SNORD114-7-201ENST00000362520 77 ntBASIC0.86□□□□□ -2.27
RFX3P48380 Y_RNA.48-201ENST00000362710 103 ntBASIC0.86□□□□□ -2.27
RFX3P48380 RNU6-424P-201ENST00000384367 105 ntBASIC0.86□□□□□ -2.27
RFX3P48380 MIR19B1-201ENST00000384829 87 ntBASIC0.86□□□□□ -2.27
RFX3P48380 SNORD115-47-201ENST00000391226 86 ntBASIC0.86□□□□□ -2.27
RFX3P48380 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.86□□□□□ -2.27
RFX3P48380 PCNPP5-201ENST00000452246 481 ntBASIC0.86□□□□□ -2.27
RFX3P48380 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.86□□□□□ -2.27
RFX3P48380 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC0.86□□□□□ -2.27
RFX3P48380 RNA5SP20-201ENST00000515976 84 ntBASIC0.86□□□□□ -2.27
RFX3P48380 RNU6-322P-201ENST00000516010 103 ntBASIC0.86□□□□□ -2.27
RFX3P48380 RNU6-1278P-201ENST00000516130 107 ntBASIC0.86□□□□□ -2.27
RFX3P48380 RNU2-56P-201ENST00000516826 190 ntBASIC0.86□□□□□ -2.27
RFX3P48380 AP002004.2-201ENST00000531656 154 ntBASIC0.86□□□□□ -2.27
RFX3P48380 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC0.86□□□□□ -2.27
RFX3P48380 AC005899.2-201ENST00000584353 90 ntBASIC0.86□□□□□ -2.27
RFX3P48380 FAM106DP-201ENST00000586416 501 ntBASIC0.86□□□□□ -2.27
RFX3P48380 AL357312.1-201ENST00000603879 298 ntBASIC0.86□□□□□ -2.27
RFX3P48380 AC005014.2-201ENST00000607795 599 ntBASIC0.86□□□□□ -2.27
RFX3P48380 AC002553.4-201ENST00000616896 331 ntBASIC0.86□□□□□ -2.27
RFX3P48380 Y_RNA.6-201ENST00000362350 114 ntBASIC0.85□□□□□ -2.27
RFX3P48380 SNORA27.1-201ENST00000362604 124 ntBASIC0.85□□□□□ -2.27
RFX3P48380 RNU4-79P-201ENST00000362764 141 ntBASIC0.85□□□□□ -2.27
RFX3P48380 RNY1P16-201ENST00000363063 111 ntBASIC0.85□□□□□ -2.27
RFX3P48380 SNORA2.2-201ENST00000365473 135 ntBASIC0.85□□□□□ -2.27
RFX3P48380 Y_RNA.363-201ENST00000365529 113 ntBASIC0.85□□□□□ -2.27
RFX3P48380 RNA5SP482-201ENST00000391269 118 ntBASIC0.85□□□□□ -2.27
RFX3P48380 MIR548K-201ENST00000408406 116 ntBASIC0.85□□□□□ -2.27
RFX3P48380 AC018865.2-201ENST00000423631 129 ntBASIC0.85□□□□□ -2.27
RFX3P48380 AC105758.1-201ENST00000506038 399 ntBASIC0.85□□□□□ -2.27
RFX3P48380 ACA64.5-201ENST00000516207 127 ntBASIC0.85□□□□□ -2.27
RFX3P48380 RNA5SP168-201ENST00000516642 112 ntBASIC0.85□□□□□ -2.27
RFX3P48380 RNU6-307P-201ENST00000516743 106 ntBASIC0.85□□□□□ -2.27
RFX3P48380 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.85□□□□□ -2.27
RFX3P48380 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.85□□□□□ -2.27
RFX3P48380 AL358944.1-201ENST00000528537 144 ntBASIC0.85□□□□□ -2.27
RFX3P48380 MIR4778-201ENST00000577635 80 ntBASIC0.85□□□□□ -2.27
RFX3P48380 MIR4698-201ENST00000577795 80 ntBASIC0.85□□□□□ -2.27
RFX3P48380 AC091178.2-201ENST00000584401 117 ntBASIC0.85□□□□□ -2.27
RFX3P48380 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.27
RFX3P48380 Y_RNA.2-201ENST00000362330 96 ntBASIC0.84□□□□□ -2.27
RFX3P48380 Y_RNA.498-201ENST00000384460 102 ntBASIC0.84□□□□□ -2.27
RFX3P48380 SNORD12-201ENST00000391002 90 ntBASIC0.84□□□□□ -2.27
RFX3P48380 AL451046.2-201ENST00000403074 277 ntBASIC0.84□□□□□ -2.27
RFX3P48380 Y_RNA.594-201ENST00000410373 140 ntBASIC0.84□□□□□ -2.27
RFX3P48380 RNU6-1050P-201ENST00000410388 107 ntBASIC0.84□□□□□ -2.27
RFX3P48380 MTND3P8-201ENST00000412909 339 ntBASIC0.84□□□□□ -2.27
RFX3P48380 AC114482.1-201ENST00000418010 247 ntBASIC0.84□□□□□ -2.27
RFX3P48380 AC002429.1-201ENST00000437672 148 ntBASIC0.84□□□□□ -2.27
RFX3P48380 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.84□□□□□ -2.27
RFX3P48380 SNORD124-201ENST00000459577 104 ntBASIC0.84□□□□□ -2.27
RFX3P48380 OR9P1P-201ENST00000496431 281 ntBASIC0.84□□□□□ -2.27
RFX3P48380 AC018710.1-201ENST00000506509 158 ntBASIC0.84□□□□□ -2.27
RFX3P48380 Y_RNA.708-201ENST00000516950 96 ntBASIC0.84□□□□□ -2.27
RFX3P48380 RNU6-1223P-201ENST00000517124 104 ntBASIC0.84□□□□□ -2.27
RFX3P48380 MIR2355-201ENST00000517199 87 ntBASIC0.84□□□□□ -2.27
RFX3P48380 AF235103.2-201ENST00000525753 346 ntBASIC0.84□□□□□ -2.27
RFX3P48380 AC018448.1-201ENST00000552843 316 ntBASIC0.84□□□□□ -2.27
RFX3P48380 MIR151B-201ENST00000584249 96 ntBASIC0.84□□□□□ -2.27
RFX3P48380 AC080078.2-201ENST00000603766 501 ntBASIC0.84□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms