| MUC1 | P15941 | RAB28P5-201 | ENST00000427490 | 651 nt | BASIC | 1 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AC096644.2-201 | ENST00000429278 | 159 nt | BASIC | 1 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AL513185.1-201 | ENST00000431638 | 162 nt | TSL 5 BASIC | 1 | □□□□□ -2.25 | | |
| MUC1 | P15941 | JTBP1-201 | ENST00000441314 | 247 nt | BASIC | 1 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AC069257.2-201 | ENST00000441819 | 155 nt | BASIC | 1 | □□□□□ -2.25 | | |
| MUC1 | P15941 | CHEK2P4-201 | ENST00000450340 | 246 nt | BASIC | 1 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AL591504.1-201 | ENST00000450681 | 414 nt | TSL 3 BASIC | 1 | □□□□□ -2.25 | | |
| MUC1 | P15941 | snoU13.27-201 | ENST00000459278 | 104 nt | BASIC | 1 | □□□□□ -2.25 | | |
| MUC1 | P15941 | RNU6-625P-201 | ENST00000459412 | 107 nt | BASIC | 1 | □□□□□ -2.25 | | |
| MUC1 | P15941 | RPS26P45-201 | ENST00000471748 | 340 nt | BASIC | 1 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AC099513.1-201 | ENST00000490423 | 301 nt | BASIC | 1 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AC010469.2-201 | ENST00000496412 | 480 nt | BASIC | 1 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AC074133.1-201 | ENST00000515696 | 183 nt | BASIC | 1 | □□□□□ -2.25 | | |
| MUC1 | P15941 | SNORA31.10-201 | ENST00000516482 | 106 nt | BASIC | 1 | □□□□□ -2.25 | | |
| MUC1 | P15941 | RNU1-142P-201 | ENST00000516682 | 145 nt | BASIC | 1 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AL137100.2-201 | ENST00000555786 | 315 nt | BASIC | 1 | □□□□□ -2.25 | | |
| MUC1 | P15941 | MIR4438-201 | ENST00000585271 | 93 nt | BASIC | 1 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AC138305.3-201 | ENST00000624988 | 240 nt | BASIC | 1 | □□□□□ -2.25 | | |
| MUC1 | P15941 | RNU6-490P-201 | ENST00000362985 | 107 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | RNU6-271P-201 | ENST00000363858 | 105 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | RNU6-961P-201 | ENST00000363893 | 105 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | SNORA25.8-201 | ENST00000364831 | 128 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | Y_RNA.314-201 | ENST00000365114 | 102 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | MIR194-1-201 | ENST00000384892 | 85 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | MIR1267-201 | ENST00000408723 | 78 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AC018511.2-201 | ENST00000413431 | 189 nt | TSL 3 BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | MRPS10P1-201 | ENST00000448483 | 130 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | RNU7-152P-201 | ENST00000458982 | 64 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | SNORD19B-201 | ENST00000459623 | 84 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | RPS27P22-201 | ENST00000478056 | 241 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AC010598.1-201 | ENST00000510378 | 103 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AC108729.3-201 | ENST00000513484 | 108 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | RNU6-408P-201 | ENST00000515910 | 100 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AC009930.1-201 | ENST00000522330 | 191 nt | TSL 5 BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AP003128.1-201 | ENST00000531414 | 448 nt | TSL 2 BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AC055872.1-201 | ENST00000570978 | 278 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AL929325.1-201 | ENST00000603096 | 117 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | U6.115-201 | ENST00000636045 | 103 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | MIR3674-201 | ENST00000636576 | 68 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | OR4C11-202 | ENST00000641580 | 2737 nt | APPRIS P1 BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | MCMDC2-207 | ENST00000492775 | 1831 nt | TSL 1 (best) BASIC | 0.99 | □□□□□ -2.25 | | |
| MUC1 | P15941 | MIR410-201 | ENST00000362222 | 80 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | Y_RNA.327-201 | ENST00000365201 | 102 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | RNU6-1040P-201 | ENST00000383974 | 107 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | Y_RNA.463-201 | ENST00000384271 | 102 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | SNORA12.1-201 | ENST00000390873 | 148 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | Y_RNA.605-201 | ENST00000410577 | 105 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | COX6CP10-201 | ENST00000416832 | 224 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AF228730.4-201 | ENST00000421457 | 183 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AL589935.1-209 | ENST00000432050 | 418 nt | TSL 5 BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | LINC02238-202 | ENST00000436262 | 320 nt | TSL 3 BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | MTATP6P23-201 | ENST00000440153 | 476 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | LINC01755-201 | ENST00000455010 | 453 nt | TSL 2 BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | snoU13.9-201 | ENST00000458927 | 103 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | RNU7-99P-201 | ENST00000516271 | 62 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | RNU7-4P-201 | ENST00000516961 | 62 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | MIR2355-201 | ENST00000517199 | 87 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AL442163.3-201 | ENST00000554110 | 156 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AL359821.1-201 | ENST00000605519 | 182 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | Y_RNA.804-201 | ENST00000615262 | 101 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AC133104.2-201 | ENST00000615272 | 193 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | SPTSSB-205 | ENST00000620149 | 231 nt | APPRIS P1 BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AC104985.2-201 | ENST00000620598 | 500 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | MIR8063-201 | ENST00000621930 | 81 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| MUC1 | P15941 | FABP12-201 | ENST00000360464 | 551 nt | APPRIS P1 TSL 1 (best) BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | MIR302D-201 | ENST00000362275 | 68 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | RNU1-22P-201 | ENST00000363334 | 158 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | Y_RNA.124-201 | ENST00000363339 | 93 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | Y_RNA.187-201 | ENST00000363918 | 113 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | SNORD1A-201 | ENST00000364968 | 72 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | Y_RNA.496-201 | ENST00000384444 | 101 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | TRAJ41-201 | ENST00000390496 | 62 nt | APPRIS P1 BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | RNU6ATAC15P-201 | ENST00000408279 | 121 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | RNA5SP475-201 | ENST00000410568 | 110 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | RPL23AP36-201 | ENST00000413895 | 458 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | MTCO2P27-201 | ENST00000420740 | 428 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AL591704.2-201 | ENST00000421658 | 181 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AC008080.3-201 | ENST00000440074 | 380 nt | TSL 3 BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | RPS29P28-201 | ENST00000446439 | 141 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | RNU7-34P-201 | ENST00000459394 | 64 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AC078980.1-201 | ENST00000485384 | 262 nt | TSL 2 BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AC093893.1-201 | ENST00000505781 | 510 nt | TSL 5 BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AC144568.1-201 | ENST00000520139 | 137 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | MIR4709-201 | ENST00000577272 | 72 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | MIR4795-201 | ENST00000584182 | 89 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | HSPE1P19-201 | ENST00000603327 | 295 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AC021506.2-201 | ENST00000612354 | 169 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | AC011476.5-201 | ENST00000615594 | 130 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | MIR8054-201 | ENST00000620877 | 86 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | ICE2P2-201 | ENST00000483823 | 2787 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| MUC1 | P15941 | KIAA1551-201 | ENST00000312561 | 6230 nt | APPRIS P1 TSL 1 (best) BASIC | 0.96 | □□□□□ -2.25 | | |
| MUC1 | P15941 | UBE3A-225 | ENST00000636667 | 5726 nt | TSL 5 BASIC | 0.96 | □□□□□ -2.26 | | |
| MUC1 | P15941 | C9orf84-201 | ENST00000318737 | 4661 nt | APPRIS P3 TSL 1 (best) BASIC | 0.96 | □□□□□ -2.26 | | |
| MUC1 | P15941 | BRCA1-202 | ENST00000354071 | 4497 nt | TSL 1 (best) BASIC | 0.96 | □□□□□ -2.26 | | |
| MUC1 | P15941 | RNU6-1115P-201 | ENST00000362490 | 106 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| MUC1 | P15941 | SNORA27.1-201 | ENST00000362604 | 124 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| MUC1 | P15941 | RNU4-73P-201 | ENST00000363164 | 141 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| MUC1 | P15941 | RNU6-407P-201 | ENST00000365280 | 104 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| MUC1 | P15941 | SNORA22-201 | ENST00000383907 | 134 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| MUC1 | P15941 | SNORA70.7-201 | ENST00000384159 | 133 nt | BASIC | 0.96 | □□□□□ -2.26 | | |