Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AL512604.1-201ENST00000404812 257 ntBASIC2.48□□□□□ -2.01
HOXA3O43365 RN7SKP220-201ENST00000410611 288 ntBASIC2.48□□□□□ -2.01
HOXA3O43365 RN7SKP123-201ENST00000410732 291 ntBASIC2.48□□□□□ -2.01
HOXA3O43365 SRIP3-201ENST00000413200 219 ntBASIC2.48□□□□□ -2.01
HOXA3O43365 HMGN2P34-201ENST00000437647 269 ntBASIC2.48□□□□□ -2.01
HOXA3O43365 AC107083.1-201ENST00000439643 279 ntBASIC2.48□□□□□ -2.01
HOXA3O43365 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.48□□□□□ -2.01
HOXA3O43365 RPS4XP11-201ENST00000446897 772 ntBASIC2.48□□□□□ -2.01
HOXA3O43365 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC2.48□□□□□ -2.01
HOXA3O43365 RNU6-1146P-201ENST00000516282 102 ntBASIC2.48□□□□□ -2.01
HOXA3O43365 DNAJC19P2-201ENST00000593340 302 ntBASIC2.48□□□□□ -2.01
HOXA3O43365 AL929325.1-201ENST00000603096 117 ntBASIC2.48□□□□□ -2.01
HOXA3O43365 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
HOXA3O43365 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.47□□□□□ -2.01
HOXA3O43365 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
HOXA3O43365 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
HOXA3O43365 RNU1-96P-201ENST00000364163 162 ntBASIC2.47□□□□□ -2.01
HOXA3O43365 SNORD114-6-201ENST00000364393 72 ntBASIC2.47□□□□□ -2.01
HOXA3O43365 SNORA54-201ENST00000384281 123 ntBASIC2.47□□□□□ -2.01
HOXA3O43365 Y_RNA.568-201ENST00000384742 113 ntBASIC2.47□□□□□ -2.01
HOXA3O43365 Y_RNA.587-201ENST00000391210 103 ntBASIC2.47□□□□□ -2.01
HOXA3O43365 RPL21P3-201ENST00000395517 478 ntBASIC2.47□□□□□ -2.01
HOXA3O43365 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.47□□□□□ -2.01
HOXA3O43365 EEF1A1P41-201ENST00000414667 207 ntBASIC2.47□□□□□ -2.01
HOXA3O43365 AC009238.1-201ENST00000442165 424 ntBASIC2.47□□□□□ -2.01
HOXA3O43365 AC009237.6-201ENST00000446969 424 ntBASIC2.47□□□□□ -2.01
HOXA3O43365 SNRPGP8-201ENST00000454064 226 ntBASIC2.47□□□□□ -2.01
HOXA3O43365 RPS29P21-201ENST00000496272 170 ntBASIC2.47□□□□□ -2.01
HOXA3O43365 RPL23AP94-201ENST00000512518 302 ntBASIC2.47□□□□□ -2.01
HOXA3O43365 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.47□□□□□ -2.01
HOXA3O43365 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HOXA3O43365 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC2.47□□□□□ -2.01
HOXA3O43365 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.46□□□□□ -2.02
HOXA3O43365 RNU6-643P-201ENST00000384018 107 ntBASIC2.46□□□□□ -2.02
HOXA3O43365 RNU6-1186P-201ENST00000410429 97 ntBASIC2.46□□□□□ -2.02
HOXA3O43365 Y_RNA.622-201ENST00000411091 108 ntBASIC2.46□□□□□ -2.02
HOXA3O43365 RN7SKP101-201ENST00000411376 320 ntBASIC2.46□□□□□ -2.02
HOXA3O43365 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXA3O43365 AC021205.2-201ENST00000480069 347 ntBASIC2.46□□□□□ -2.02
HOXA3O43365 RNU6-1041P-201ENST00000516254 102 ntBASIC2.46□□□□□ -2.02
HOXA3O43365 NDUFA5P6-201ENST00000542110 379 ntBASIC2.46□□□□□ -2.02
HOXA3O43365 MIR548X2-201ENST00000579776 100 ntBASIC2.46□□□□□ -2.02
HOXA3O43365 AL033523.1-201ENST00000605153 153 ntBASIC2.46□□□□□ -2.02
HOXA3O43365 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.46□□□□□ -2.02
HOXA3O43365 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.46□□□□□ -2.02
HOXA3O43365 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
HOXA3O43365 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
HOXA3O43365 snoU2-30.2-201ENST00000362805 70 ntBASIC2.45□□□□□ -2.02
HOXA3O43365 Y_RNA.203-201ENST00000364106 102 ntBASIC2.45□□□□□ -2.02
HOXA3O43365 RNU4-11P-201ENST00000365287 132 ntBASIC2.45□□□□□ -2.02
HOXA3O43365 MIR569-201ENST00000385228 96 ntBASIC2.45□□□□□ -2.02
HOXA3O43365 Z96811.1-201ENST00000445880 108 ntBASIC2.45□□□□□ -2.02
HOXA3O43365 AC245102.2-201ENST00000448956 180 ntBASIC2.45□□□□□ -2.02
HOXA3O43365 RNA5SP272-201ENST00000516095 111 ntBASIC2.45□□□□□ -2.02
HOXA3O43365 RNU7-99P-201ENST00000516271 62 ntBASIC2.45□□□□□ -2.02
HOXA3O43365 RNU6-426P-201ENST00000516464 97 ntBASIC2.45□□□□□ -2.02
HOXA3O43365 AC011604.1-201ENST00000545978 196 ntBASIC2.45□□□□□ -2.02
HOXA3O43365 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXA3O43365 AC091895.1-201ENST00000624494 256 ntBASIC2.45□□□□□ -2.02
HOXA3O43365 MIR3658-201ENST00000636291 56 ntBASIC2.45□□□□□ -2.02
HOXA3O43365 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.45□□□□□ -2.02
HOXA3O43365 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
HOXA3O43365 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
HOXA3O43365 AC108206.1-201ENST00000570186 4159 ntBASIC2.44□□□□□ -2.02
HOXA3O43365 Y_RNA.99-201ENST00000363138 105 ntBASIC2.44□□□□□ -2.02
HOXA3O43365 RNU6-1180P-201ENST00000364935 107 ntBASIC2.44□□□□□ -2.02
HOXA3O43365 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
HOXA3O43365 MIR1262-201ENST00000408276 93 ntBASIC2.44□□□□□ -2.02
HOXA3O43365 RNU4-43P-201ENST00000410628 137 ntBASIC2.44□□□□□ -2.02
HOXA3O43365 RPL32P35-201ENST00000415214 394 ntBASIC2.44□□□□□ -2.02
HOXA3O43365 AC063976.3-201ENST00000426849 329 ntBASIC2.44□□□□□ -2.02
HOXA3O43365 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.44□□□□□ -2.02
HOXA3O43365 MIR2681-201ENST00000581814 105 ntBASIC2.44□□□□□ -2.02
HOXA3O43365 AL031274.2-201ENST00000599419 203 ntBASIC2.44□□□□□ -2.02
HOXA3O43365 AL021707.8-201ENST00000609428 183 ntBASIC2.44□□□□□ -2.02
HOXA3O43365 AL449363.1-201ENST00000617815 186 ntBASIC2.44□□□□□ -2.02
HOXA3O43365 U4atac.1-201ENST00000618345 95 ntBASIC2.44□□□□□ -2.02
HOXA3O43365 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
HOXA3O43365 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
HOXA3O43365 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.43□□□□□ -2.02
HOXA3O43365 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.43□□□□□ -2.02
HOXA3O43365 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
HOXA3O43365 SNORD45.3-201ENST00000363836 72 ntBASIC2.43□□□□□ -2.02
HOXA3O43365 RNU6-1072P-201ENST00000384703 107 ntBASIC2.43□□□□□ -2.02
HOXA3O43365 RNU6-443P-201ENST00000384780 107 ntBASIC2.43□□□□□ -2.02
HOXA3O43365 RNA5SP467-201ENST00000391274 118 ntBASIC2.43□□□□□ -2.02
HOXA3O43365 RNA5SP344-201ENST00000411081 104 ntBASIC2.43□□□□□ -2.02
HOXA3O43365 AC092427.1-202ENST00000430569 476 ntBASIC2.43□□□□□ -2.02
HOXA3O43365 AL353689.1-201ENST00000438895 199 ntBASIC2.43□□□□□ -2.02
HOXA3O43365 RNU1-131P-201ENST00000458943 161 ntBASIC2.43□□□□□ -2.02
HOXA3O43365 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.43□□□□□ -2.02
HOXA3O43365 RNU6-1096P-201ENST00000517089 102 ntBASIC2.43□□□□□ -2.02
HOXA3O43365 RPL23AP91-201ENST00000569211 455 ntBASIC2.43□□□□□ -2.02
HOXA3O43365 AL049861.1-201ENST00000603130 150 ntBASIC2.43□□□□□ -2.02
HOXA3O43365 AC006023.1-201ENST00000603944 259 ntBASIC2.43□□□□□ -2.02
HOXA3O43365 AC073413.2-201ENST00000604332 360 ntBASIC2.43□□□□□ -2.02
HOXA3O43365 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.43□□□□□ -2.02
HOXA3O43365 AC073476.4-201ENST00000628409 72 ntBASIC2.43□□□□□ -2.02
HOXA3O43365 MIR338-201ENST00000636369 67 ntBASIC2.43□□□□□ -2.02
HOXA3O43365 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 196.8 ms