Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RNA5SP68-201ENST00000363885 119 ntBASIC2.69□□□□□ -1.98
CBX4O00257 RNU4-13P-201ENST00000364019 141 ntBASIC2.69□□□□□ -1.98
CBX4O00257 RNU6-417P-201ENST00000384712 107 ntBASIC2.69□□□□□ -1.98
CBX4O00257 SNORD88.1-201ENST00000408684 91 ntBASIC2.69□□□□□ -1.98
CBX4O00257 AL513328.1-201ENST00000446460 224 ntBASIC2.69□□□□□ -1.98
CBX4O00257 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.69□□□□□ -1.98
CBX4O00257 AC097462.1-201ENST00000514125 324 ntBASIC2.69□□□□□ -1.98
CBX4O00257 MIR5692C2-201ENST00000577959 77 ntBASIC2.69□□□□□ -1.98
CBX4O00257 AL353149.1-201ENST00000610667 244 ntBASIC2.69□□□□□ -1.98
CBX4O00257 AL365265.1-201ENST00000621045 234 ntBASIC2.69□□□□□ -1.98
CBX4O00257 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.69□□□□□ -1.98
CBX4O00257 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CBX4O00257 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
CBX4O00257 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
CBX4O00257 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
CBX4O00257 RNU1-22P-201ENST00000363334 158 ntBASIC2.68□□□□□ -1.98
CBX4O00257 Y_RNA.172-201ENST00000363765 102 ntBASIC2.68□□□□□ -1.98
CBX4O00257 RNU6-1048P-201ENST00000364054 107 ntBASIC2.68□□□□□ -1.98
CBX4O00257 RNA5SP493-201ENST00000364115 91 ntBASIC2.68□□□□□ -1.98
CBX4O00257 RNU6-376P-201ENST00000384731 106 ntBASIC2.68□□□□□ -1.98
CBX4O00257 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.68□□□□□ -1.98
CBX4O00257 AC104332.1-201ENST00000440471 797 ntBASIC2.68□□□□□ -1.98
CBX4O00257 RNU7-141P-201ENST00000459304 62 ntBASIC2.68□□□□□ -1.98
CBX4O00257 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.68□□□□□ -1.98
CBX4O00257 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.68□□□□□ -1.98
CBX4O00257 RNU1-41P-201ENST00000516161 162 ntBASIC2.68□□□□□ -1.98
CBX4O00257 RNU1-48P-201ENST00000516400 162 ntBASIC2.68□□□□□ -1.98
CBX4O00257 RNA5SP137-201ENST00000516833 135 ntBASIC2.68□□□□□ -1.98
CBX4O00257 AC007229.1-201ENST00000590455 412 ntBASIC2.68□□□□□ -1.98
CBX4O00257 AC005972.2-201ENST00000604690 348 ntBASIC2.68□□□□□ -1.98
CBX4O00257 AC004832.4-201ENST00000608952 331 ntBASIC2.68□□□□□ -1.98
CBX4O00257 U6.73-201ENST00000619194 103 ntBASIC2.68□□□□□ -1.98
CBX4O00257 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CBX4O00257 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
CBX4O00257 RNU6-1020P-201ENST00000363684 107 ntBASIC2.67□□□□□ -1.98
CBX4O00257 Y_RNA.293-201ENST00000364908 93 ntBASIC2.67□□□□□ -1.98
CBX4O00257 SNORD116-13-201ENST00000384408 92 ntBASIC2.67□□□□□ -1.98
CBX4O00257 RNU11-5P-201ENST00000391216 129 ntBASIC2.67□□□□□ -1.98
CBX4O00257 AL590004.2-201ENST00000404787 371 ntBASIC2.67□□□□□ -1.98
CBX4O00257 AL355497.1-201ENST00000406262 551 ntBASIC2.67□□□□□ -1.98
CBX4O00257 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.67□□□□□ -1.98
CBX4O00257 RPS15AP28-201ENST00000435088 386 ntBASIC2.67□□□□□ -1.98
CBX4O00257 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.67□□□□□ -1.98
CBX4O00257 RNU6-63P-201ENST00000516690 95 ntBASIC2.67□□□□□ -1.98
CBX4O00257 RNU7-116P-201ENST00000516940 62 ntBASIC2.67□□□□□ -1.98
CBX4O00257 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.67□□□□□ -1.98
CBX4O00257 AC022202.1-201ENST00000613515 211 ntBASIC2.67□□□□□ -1.98
CBX4O00257 MIR548AY-201ENST00000617669 107 ntBASIC2.67□□□□□ -1.98
CBX4O00257 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.67□□□□□ -1.98
CBX4O00257 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CBX4O00257 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
CBX4O00257 RNU6-1205P-201ENST00000363625 106 ntBASIC2.66□□□□□ -1.98
CBX4O00257 RNU6-1164P-201ENST00000364428 107 ntBASIC2.66□□□□□ -1.98
CBX4O00257 MIR515-2-201ENST00000384883 83 ntBASIC2.66□□□□□ -1.98
CBX4O00257 MIR515-1-201ENST00000384884 83 ntBASIC2.66□□□□□ -1.98
CBX4O00257 MT-TR-201ENST00000387439 65 ntBASIC2.66□□□□□ -1.98
CBX4O00257 RNU6-1186P-201ENST00000410429 97 ntBASIC2.66□□□□□ -1.98
CBX4O00257 PIGPP3-201ENST00000425307 415 ntBASIC2.66□□□□□ -1.98
CBX4O00257 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.66□□□□□ -1.98
CBX4O00257 RPS27AP9-201ENST00000477681 438 ntBASIC2.66□□□□□ -1.98
CBX4O00257 AC098479.1-201ENST00000609225 154 ntBASIC2.66□□□□□ -1.98
CBX4O00257 AL359075.3-201ENST00000613288 217 ntBASIC2.66□□□□□ -1.98
CBX4O00257 MIR338-201ENST00000636369 67 ntBASIC2.66□□□□□ -1.98
CBX4O00257 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
CBX4O00257 RNU1-58P-201ENST00000362413 163 ntBASIC2.65□□□□□ -1.99
CBX4O00257 Y_RNA.308-201ENST00000365043 101 ntBASIC2.65□□□□□ -1.99
CBX4O00257 RNU6-117P-201ENST00000365415 107 ntBASIC2.65□□□□□ -1.99
CBX4O00257 RNU1-109P-201ENST00000383960 147 ntBASIC2.65□□□□□ -1.99
CBX4O00257 RNU6-1323P-201ENST00000384025 107 ntBASIC2.65□□□□□ -1.99
CBX4O00257 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.65□□□□□ -1.99
CBX4O00257 AL135786.1-201ENST00000415892 214 ntBASIC2.65□□□□□ -1.99
CBX4O00257 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.65□□□□□ -1.99
CBX4O00257 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC2.65□□□□□ -1.99
CBX4O00257 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.65□□□□□ -1.99
CBX4O00257 RNU7-115P-201ENST00000516433 55 ntBASIC2.65□□□□□ -1.99
CBX4O00257 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.65□□□□□ -1.99
CBX4O00257 CBX3P4-201ENST00000538909 354 ntBASIC2.65□□□□□ -1.99
CBX4O00257 AC004792.1-201ENST00000614523 137 ntBASIC2.65□□□□□ -1.99
CBX4O00257 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.65□□□□□ -1.99
CBX4O00257 AL590808.1-201ENST00000618696 141 ntBASIC2.65□□□□□ -1.99
CBX4O00257 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
CBX4O00257 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.65□□□□□ -1.99
CBX4O00257 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.65□□□□□ -1.99
CBX4O00257 U8.7-201ENST00000364940 136 ntBASIC2.64□□□□□ -1.99
CBX4O00257 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.64□□□□□ -1.99
CBX4O00257 RNU6-144P-201ENST00000383951 107 ntBASIC2.64□□□□□ -1.99
CBX4O00257 SNORA70B-201ENST00000384210 135 ntBASIC2.64□□□□□ -1.99
CBX4O00257 RNA5SP210-201ENST00000391034 120 ntBASIC2.64□□□□□ -1.99
CBX4O00257 RNA5SP323-201ENST00000391094 133 ntBASIC2.64□□□□□ -1.99
CBX4O00257 RNA5SP511-201ENST00000410487 115 ntBASIC2.64□□□□□ -1.99
CBX4O00257 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.64□□□□□ -1.99
CBX4O00257 AL162725.1-201ENST00000435405 301 ntBASIC2.64□□□□□ -1.99
CBX4O00257 AC018634.1-201ENST00000437554 401 ntBASIC2.64□□□□□ -1.99
CBX4O00257 AC117454.1-201ENST00000491120 168 ntBASIC2.64□□□□□ -1.99
CBX4O00257 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.64□□□□□ -1.99
CBX4O00257 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.64□□□□□ -1.99
CBX4O00257 RNA5SP282-201ENST00000516355 108 ntBASIC2.64□□□□□ -1.99
CBX4O00257 AP002392.1-201ENST00000537692 208 ntBASIC2.64□□□□□ -1.99
CBX4O00257 AC015720.1-201ENST00000565251 277 ntBASIC2.64□□□□□ -1.99
CBX4O00257 MIR3169-201ENST00000578032 83 ntBASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms