Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MIR1302-5-201ENST00000408164 150 ntBASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 RNU6-1328P-201ENST00000410938 106 ntBASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 AC007064.1-201ENST00000412238 351 ntBASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 RPS29P12-201ENST00000460178 152 ntBASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 AC090115.4-201ENST00000609970 188 ntBASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 U7.8-201ENST00000619968 63 ntBASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 MIR1248-201ENST00000629190 106 ntBASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 MAPK10-362ENST00000641864 4484 ntBASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 RNU6-546P-201ENST00000383991 107 ntBASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 MIR218-1-201ENST00000384999 110 ntBASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 AL513477.1-202ENST00000417061 214 ntBASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 AC009969.1-201ENST00000438726 172 ntBASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 RPS29P7-201ENST00000439662 171 ntBASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 RN7SL594P-201ENST00000470590 287 ntBASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 RPL39P34-201ENST00000477141 156 ntBASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 NDUFA4P2-201ENST00000489989 244 ntBASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 MRPS17P9-201ENST00000511924 393 ntBASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 RNU6-1149P-201ENST00000516810 97 ntBASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 RNU6-1096P-201ENST00000517089 102 ntBASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 RNA5SP490-201ENST00000517141 136 ntBASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 AC022149.2-201ENST00000621061 203 ntBASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 AP003355.3-201ENST00000623465 114 ntBASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 MIR7515-201ENST00000637837 67 ntBASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HIF3AQ9Y2N7 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.21□□□□□ -1.89
HIF3AQ9Y2N7 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
HIF3AQ9Y2N7 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.21□□□□□ -1.9
HIF3AQ9Y2N7 SNORA12.1-201ENST00000390873 148 ntBASIC3.21□□□□□ -1.9
HIF3AQ9Y2N7 AL031121.1-201ENST00000406553 254 ntBASIC3.21□□□□□ -1.9
HIF3AQ9Y2N7 AC063976.3-201ENST00000426849 329 ntBASIC3.21□□□□□ -1.9
HIF3AQ9Y2N7 RNU6-504P-201ENST00000516568 104 ntBASIC3.21□□□□□ -1.9
HIF3AQ9Y2N7 AC026333.2-201ENST00000542164 106 ntBASIC3.21□□□□□ -1.9
HIF3AQ9Y2N7 MIR4429-201ENST00000580105 73 ntBASIC3.21□□□□□ -1.9
HIF3AQ9Y2N7 MIR4425-201ENST00000580572 84 ntBASIC3.21□□□□□ -1.9
HIF3AQ9Y2N7 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HIF3AQ9Y2N7 AL137067.1-201ENST00000615933 120 ntBASIC3.21□□□□□ -1.9
HIF3AQ9Y2N7 MIR5739-201ENST00000619803 80 ntBASIC3.21□□□□□ -1.9
HIF3AQ9Y2N7 AC080128.1-201ENST00000474389 1917 ntBASIC3.21□□□□□ -1.9
HIF3AQ9Y2N7 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
HIF3AQ9Y2N7 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
HIF3AQ9Y2N7 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
HIF3AQ9Y2N7 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
HIF3AQ9Y2N7 RNU6-743P-201ENST00000364151 106 ntBASIC3.2□□□□□ -1.9
HIF3AQ9Y2N7 SNORD61-201ENST00000384252 73 ntBASIC3.2□□□□□ -1.9
HIF3AQ9Y2N7 MIR670-201ENST00000390142 98 ntBASIC3.2□□□□□ -1.9
HIF3AQ9Y2N7 SNORA48.8-201ENST00000391324 134 ntBASIC3.2□□□□□ -1.9
HIF3AQ9Y2N7 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.2□□□□□ -1.9
HIF3AQ9Y2N7 AC018634.1-201ENST00000437554 401 ntBASIC3.2□□□□□ -1.9
HIF3AQ9Y2N7 RNU6-126P-201ENST00000516685 103 ntBASIC3.2□□□□□ -1.9
HIF3AQ9Y2N7 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.2□□□□□ -1.9
HIF3AQ9Y2N7 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.2□□□□□ -1.9
HIF3AQ9Y2N7 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.2□□□□□ -1.9
HIF3AQ9Y2N7 MIR3199-1-201ENST00000582434 88 ntBASIC3.2□□□□□ -1.9
HIF3AQ9Y2N7 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.2□□□□□ -1.9
HIF3AQ9Y2N7 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HIF3AQ9Y2N7 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
HIF3AQ9Y2N7 MFSD8-233ENST00000641482 4860 ntBASIC3.2□□□□□ -1.9
HIF3AQ9Y2N7 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 RNU6-1014P-201ENST00000383940 103 ntBASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 Y_RNA.558-201ENST00000384685 113 ntBASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 U8.11-201ENST00000384699 133 ntBASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 RNA5SP136-201ENST00000410906 107 ntBASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 ATP5A1P2-201ENST00000412323 255 ntBASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 AC233266.1-201ENST00000454518 96 ntBASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 U8.18-201ENST00000459285 133 ntBASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 SEM1P1-201ENST00000506694 209 ntBASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 AC011406.1-201ENST00000512440 370 ntBASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 AC006130.2-201ENST00000586202 326 ntBASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 AC242852.1-201ENST00000612151 96 ntBASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 5S_rRNA.11-201ENST00000618635 84 ntBASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 AC244015.1-201ENST00000622301 99 ntBASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HIF3AQ9Y2N7 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 RNA5SP51-201ENST00000364750 119 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 165.6 ms