Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 SNORA27-201ENST00000384323 126 ntBASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 MIR3074-201ENST00000384885 81 ntBASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 MIR513A2-201ENST00000385249 127 ntBASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 RNA5SP39-201ENST00000411245 120 ntBASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 Z98742.3-201ENST00000418637 326 ntBASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 AC069257.2-201ENST00000441819 155 ntBASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 SNORA31.4-201ENST00000516049 129 ntBASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 RNU6-523P-201ENST00000516304 54 ntBASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 AP000867.2-201ENST00000532468 320 ntBASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 PARP1P2-201ENST00000556806 195 ntBASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 AL353149.1-201ENST00000610667 244 ntBASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 MIR3653-201ENST00000625572 110 ntBASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS9D1Q9Y2B5 AC005336.3-201ENST00000623833 2679 ntBASIC4.1□□□□□ -1.75
VPS9D1Q9Y2B5 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS9D1Q9Y2B5 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.1□□□□□ -1.75
VPS9D1Q9Y2B5 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS9D1Q9Y2B5 SNORD115-2-201ENST00000362842 82 ntBASIC4.1□□□□□ -1.75
VPS9D1Q9Y2B5 Y_RNA.171-201ENST00000363760 102 ntBASIC4.1□□□□□ -1.75
VPS9D1Q9Y2B5 SNORD115-20-201ENST00000365099 82 ntBASIC4.1□□□□□ -1.75
VPS9D1Q9Y2B5 AC060773.1-201ENST00000421698 310 ntBASIC4.1□□□□□ -1.75
VPS9D1Q9Y2B5 RNU7-96P-201ENST00000459535 64 ntBASIC4.1□□□□□ -1.75
VPS9D1Q9Y2B5 AC106707.2-201ENST00000484182 374 ntBASIC4.1□□□□□ -1.75
VPS9D1Q9Y2B5 RNU6-998P-201ENST00000515894 101 ntBASIC4.1□□□□□ -1.75
VPS9D1Q9Y2B5 AC140658.3-201ENST00000567603 271 ntBASIC4.1□□□□□ -1.75
VPS9D1Q9Y2B5 MIR8059-201ENST00000620427 81 ntBASIC4.1□□□□□ -1.75
VPS9D1Q9Y2B5 MIR1248-201ENST00000629190 106 ntBASIC4.1□□□□□ -1.75
VPS9D1Q9Y2B5 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS9D1Q9Y2B5 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
VPS9D1Q9Y2B5 AF117829.1-206ENST00000621883 3802 ntBASIC4.1□□□□□ -1.75
VPS9D1Q9Y2B5 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
VPS9D1Q9Y2B5 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC4.1□□□□□ -1.75
VPS9D1Q9Y2B5 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS9D1Q9Y2B5 LINC02471-203ENST00000641941 4752 ntBASIC4.09□□□□□ -1.75
VPS9D1Q9Y2B5 RNU6-1163P-201ENST00000364516 107 ntBASIC4.09□□□□□ -1.75
VPS9D1Q9Y2B5 U8.5-201ENST00000364528 136 ntBASIC4.09□□□□□ -1.75
VPS9D1Q9Y2B5 Y_RNA.340-201ENST00000365330 92 ntBASIC4.09□□□□□ -1.75
VPS9D1Q9Y2B5 MIR1251-201ENST00000408552 70 ntBASIC4.09□□□□□ -1.75
VPS9D1Q9Y2B5 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS9D1Q9Y2B5 AC091167.1-201ENST00000492017 396 ntBASIC4.09□□□□□ -1.75
VPS9D1Q9Y2B5 AC025554.1-201ENST00000505641 188 ntBASIC4.09□□□□□ -1.75
VPS9D1Q9Y2B5 RNU6-965P-201ENST00000516721 96 ntBASIC4.09□□□□□ -1.75
VPS9D1Q9Y2B5 RNU7-143P-201ENST00000516781 65 ntBASIC4.09□□□□□ -1.75
VPS9D1Q9Y2B5 RNU6-586P-201ENST00000517265 104 ntBASIC4.09□□□□□ -1.75
VPS9D1Q9Y2B5 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS9D1Q9Y2B5 MIR4765-201ENST00000585007 77 ntBASIC4.09□□□□□ -1.75
VPS9D1Q9Y2B5 ZNF861P-201ENST00000588126 639 ntBASIC4.09□□□□□ -1.75
VPS9D1Q9Y2B5 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.09□□□□□ -1.75
VPS9D1Q9Y2B5 ICE2P2-201ENST00000483823 2787 ntBASIC4.09□□□□□ -1.75
VPS9D1Q9Y2B5 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
VPS9D1Q9Y2B5 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
VPS9D1Q9Y2B5 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC4.09□□□□□ -1.76
VPS9D1Q9Y2B5 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 snoU2-30.2-201ENST00000362805 70 ntBASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 SNORA3C-201ENST00000408792 125 ntBASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 AC004975.1-201ENST00000428733 208 ntBASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 AC006011.1-201ENST00000442758 349 ntBASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 RN7SL604P-201ENST00000492589 296 ntBASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 RNA5SP112-201ENST00000515937 99 ntBASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 RNU1-61P-201ENST00000516107 151 ntBASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 SNORD45.4-201ENST00000516629 73 ntBASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 RNA5SP33-201ENST00000516687 98 ntBASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 MIR548AE2-201ENST00000583456 67 ntBASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 MIR5684-201ENST00000585074 65 ntBASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 AC006130.2-201ENST00000586202 326 ntBASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 AC114781.5-201ENST00000615297 108 ntBASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 AC092881.1-201ENST00000638218 2733 ntBASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
VPS9D1Q9Y2B5 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS9D1Q9Y2B5 Y_RNA.140-201ENST00000363474 103 ntBASIC4.07□□□□□ -1.76
VPS9D1Q9Y2B5 SNORD35B-201ENST00000363660 87 ntBASIC4.07□□□□□ -1.76
VPS9D1Q9Y2B5 Y_RNA.241-201ENST00000364470 117 ntBASIC4.07□□□□□ -1.76
VPS9D1Q9Y2B5 Y_RNA.247-201ENST00000364500 92 ntBASIC4.07□□□□□ -1.76
VPS9D1Q9Y2B5 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS9D1Q9Y2B5 RPL31P63-201ENST00000422565 375 ntBASIC4.07□□□□□ -1.76
VPS9D1Q9Y2B5 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS9D1Q9Y2B5 AL109933.2-201ENST00000452651 260 ntBASIC4.07□□□□□ -1.76
VPS9D1Q9Y2B5 MIR4727-201ENST00000622232 55 ntBASIC4.07□□□□□ -1.76
VPS9D1Q9Y2B5 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS9D1Q9Y2B5 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
VPS9D1Q9Y2B5 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.07□□□□□ -1.76
VPS9D1Q9Y2B5 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms