Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
VPS4AQ9UN37 MIR21-201ENST00000362134 72 ntBASIC2.31□□□□□ -2.04
VPS4AQ9UN37 Y_RNA.238-201ENST00000364441 102 ntBASIC2.31□□□□□ -2.04
VPS4AQ9UN37 Y_RNA.307-201ENST00000365022 117 ntBASIC2.31□□□□□ -2.04
VPS4AQ9UN37 Y_RNA.418-201ENST00000384029 102 ntBASIC2.31□□□□□ -2.04
VPS4AQ9UN37 Y_RNA.569-201ENST00000384749 103 ntBASIC2.31□□□□□ -2.04
VPS4AQ9UN37 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.31□□□□□ -2.04
VPS4AQ9UN37 U3.40-201ENST00000408706 208 ntBASIC2.31□□□□□ -2.04
VPS4AQ9UN37 RNA5SP247-201ENST00000411181 105 ntBASIC2.31□□□□□ -2.04
VPS4AQ9UN37 AC016909.1-201ENST00000415916 166 ntBASIC2.31□□□□□ -2.04
VPS4AQ9UN37 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
VPS4AQ9UN37 SUMO1P2-201ENST00000452524 304 ntBASIC2.31□□□□□ -2.04
VPS4AQ9UN37 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.31□□□□□ -2.04
VPS4AQ9UN37 RNU1-131P-201ENST00000458943 161 ntBASIC2.31□□□□□ -2.04
VPS4AQ9UN37 RNA5SP458-201ENST00000516188 119 ntBASIC2.31□□□□□ -2.04
VPS4AQ9UN37 RNU6-155P-201ENST00000516347 100 ntBASIC2.31□□□□□ -2.04
VPS4AQ9UN37 Y_RNA.680-201ENST00000516441 93 ntBASIC2.31□□□□□ -2.04
VPS4AQ9UN37 DEFB108E-201ENST00000524692 240 ntBASIC2.31□□□□□ -2.04
VPS4AQ9UN37 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.31□□□□□ -2.04
VPS4AQ9UN37 AC009127.3-201ENST00000570531 403 ntBASIC2.31□□□□□ -2.04
VPS4AQ9UN37 MIR3671-201ENST00000580455 88 ntBASIC2.31□□□□□ -2.04
VPS4AQ9UN37 AL353997.5-201ENST00000618886 171 ntBASIC2.31□□□□□ -2.04
VPS4AQ9UN37 SDR42E1P4-201ENST00000620894 481 ntBASIC2.31□□□□□ -2.04
VPS4AQ9UN37 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
VPS4AQ9UN37 AL159152.1-201ENST00000635019 2587 ntBASIC2.3□□□□□ -2.04
VPS4AQ9UN37 AC005336.3-201ENST00000623833 2679 ntBASIC2.3□□□□□ -2.04
VPS4AQ9UN37 RNA5SP99-201ENST00000364020 114 ntBASIC2.3□□□□□ -2.04
VPS4AQ9UN37 Y_RNA.383-201ENST00000383855 97 ntBASIC2.3□□□□□ -2.04
VPS4AQ9UN37 Y_RNA.447-201ENST00000384184 113 ntBASIC2.3□□□□□ -2.04
VPS4AQ9UN37 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
VPS4AQ9UN37 MIR764-201ENST00000390811 85 ntBASIC2.3□□□□□ -2.04
VPS4AQ9UN37 AL355796.1-201ENST00000406706 323 ntBASIC2.3□□□□□ -2.04
VPS4AQ9UN37 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS4AQ9UN37 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS4AQ9UN37 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS4AQ9UN37 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.3□□□□□ -2.04
VPS4AQ9UN37 HMGN2P3-201ENST00000433603 273 ntBASIC2.3□□□□□ -2.04
VPS4AQ9UN37 HMGN2P5-201ENST00000436882 273 ntBASIC2.3□□□□□ -2.04
VPS4AQ9UN37 RPL39P38-201ENST00000467018 153 ntBASIC2.3□□□□□ -2.04
VPS4AQ9UN37 RNU2-31P-201ENST00000516954 155 ntBASIC2.3□□□□□ -2.04
VPS4AQ9UN37 AC110588.1-201ENST00000559699 137 ntBASIC2.3□□□□□ -2.04
VPS4AQ9UN37 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS4AQ9UN37 AC006380.1-201ENST00000603598 186 ntBASIC2.3□□□□□ -2.04
VPS4AQ9UN37 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.29□□□□□ -2.04
VPS4AQ9UN37 UBE2WP1-201ENST00000362030 340 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 Y_RNA.188-201ENST00000363952 111 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 RNU2-61P-201ENST00000411069 191 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 RNU6-57P-201ENST00000411348 103 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.29□□□□□ -2.04
VPS4AQ9UN37 MTCO1P5-201ENST00000433573 344 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 AL603825.1-201ENST00000438481 80 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 MTND4LP30-201ENST00000454092 297 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 SNORD65B-201ENST00000459126 73 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.29□□□□□ -2.04
VPS4AQ9UN37 RNU6-1023P-201ENST00000516137 106 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 MIR1273D-201ENST00000577266 86 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.29□□□□□ -2.04
VPS4AQ9UN37 U2.15-201ENST00000611544 191 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 U2.16-201ENST00000613119 191 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 U2.12-201ENST00000613778 191 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 U2.20-201ENST00000613956 192 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 U2.9-201ENST00000615427 191 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 U2.11-201ENST00000616345 191 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 U2.2-201ENST00000616535 191 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 U2.3-201ENST00000617785 191 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 U2.19-201ENST00000618602 191 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 RNU2-1-201ENST00000618664 191 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 U2.6-201ENST00000619225 191 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 U2.5-201ENST00000619465 191 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 U2.10-201ENST00000620268 191 ntBASIC2.29□□□□□ -2.04
VPS4AQ9UN37 MTND5P6-201ENST00000422338 1798 ntBASIC2.28□□□□□ -2.04
VPS4AQ9UN37 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.28□□□□□ -2.04
VPS4AQ9UN37 AC131280.1-202ENST00000624067 4211 ntBASIC2.28□□□□□ -2.04
VPS4AQ9UN37 Y_RNA.20-201ENST00000362479 113 ntBASIC2.28□□□□□ -2.04
VPS4AQ9UN37 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
VPS4AQ9UN37 SNORD14D-201ENST00000384390 87 ntBASIC2.28□□□□□ -2.04
VPS4AQ9UN37 AL031003.1-201ENST00000404229 172 ntBASIC2.28□□□□□ -2.04
VPS4AQ9UN37 POLR2KP2-201ENST00000438155 177 ntBASIC2.28□□□□□ -2.04
VPS4AQ9UN37 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.28□□□□□ -2.04
VPS4AQ9UN37 AC010598.1-201ENST00000510378 103 ntBASIC2.28□□□□□ -2.04
VPS4AQ9UN37 SNORA4.4-201ENST00000515921 135 ntBASIC2.28□□□□□ -2.04
VPS4AQ9UN37 RNA5SP137-201ENST00000516833 135 ntBASIC2.28□□□□□ -2.04
VPS4AQ9UN37 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.28□□□□□ -2.04
VPS4AQ9UN37 SNORD14A-201ENST00000606526 91 ntBASIC2.28□□□□□ -2.04
VPS4AQ9UN37 MIR6840-201ENST00000611937 71 ntBASIC2.28□□□□□ -2.04
VPS4AQ9UN37 MIR6873-201ENST00000622788 63 ntBASIC2.28□□□□□ -2.04
VPS4AQ9UN37 AC006435.5-201ENST00000624486 112 ntBASIC2.28□□□□□ -2.04
VPS4AQ9UN37 MIR203B-201ENST00000636080 86 ntBASIC2.28□□□□□ -2.04
VPS4AQ9UN37 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
VPS4AQ9UN37 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.28□□□□□ -2.04
VPS4AQ9UN37 SNORD114-6-201ENST00000364393 72 ntBASIC2.27□□□□□ -2.05
VPS4AQ9UN37 RNU6-1164P-201ENST00000364428 107 ntBASIC2.27□□□□□ -2.05
VPS4AQ9UN37 Y_RNA.329-201ENST00000365209 107 ntBASIC2.27□□□□□ -2.05
VPS4AQ9UN37 Y_RNA.352-201ENST00000365439 102 ntBASIC2.27□□□□□ -2.05
VPS4AQ9UN37 SNORA53-201ENST00000391141 249 ntBASIC2.27□□□□□ -2.05
VPS4AQ9UN37 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.27□□□□□ -2.05
VPS4AQ9UN37 AC008134.1-201ENST00000420943 193 ntBASIC2.27□□□□□ -2.05
VPS4AQ9UN37 AC060773.1-201ENST00000421698 310 ntBASIC2.27□□□□□ -2.05
VPS4AQ9UN37 AL353689.1-201ENST00000438895 199 ntBASIC2.27□□□□□ -2.05
VPS4AQ9UN37 MRPS10P1-201ENST00000448483 130 ntBASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 146.6 ms