Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC022217.4-201ENST00000604389 163 ntBASIC1.31□□□□□ -2.2
LHX3Q9UBR4 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.3□□□□□ -2.2
LHX3Q9UBR4 MIR337-201ENST00000362281 93 ntBASIC1.3□□□□□ -2.2
LHX3Q9UBR4 RNU6-1123P-201ENST00000362347 106 ntBASIC1.3□□□□□ -2.2
LHX3Q9UBR4 RNU6-1188P-201ENST00000363795 107 ntBASIC1.3□□□□□ -2.2
LHX3Q9UBR4 RNU6-318P-201ENST00000384283 103 ntBASIC1.3□□□□□ -2.2
LHX3Q9UBR4 RNU6-310P-201ENST00000384655 107 ntBASIC1.3□□□□□ -2.2
LHX3Q9UBR4 MIR513A1-201ENST00000385138 129 ntBASIC1.3□□□□□ -2.2
LHX3Q9UBR4 MRPL42P3-201ENST00000401492 326 ntBASIC1.3□□□□□ -2.2
LHX3Q9UBR4 RPS27P16-201ENST00000425758 201 ntBASIC1.3□□□□□ -2.2
LHX3Q9UBR4 AC245047.3-201ENST00000429428 127 ntBASIC1.3□□□□□ -2.2
LHX3Q9UBR4 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.3□□□□□ -2.2
LHX3Q9UBR4 PCNPP5-201ENST00000452246 481 ntBASIC1.3□□□□□ -2.2
LHX3Q9UBR4 MIR2053-201ENST00000459295 91 ntBASIC1.3□□□□□ -2.2
LHX3Q9UBR4 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.3□□□□□ -2.2
LHX3Q9UBR4 RPS27P22-201ENST00000478056 241 ntBASIC1.3□□□□□ -2.2
LHX3Q9UBR4 AC010469.2-201ENST00000496412 480 ntBASIC1.3□□□□□ -2.2
LHX3Q9UBR4 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.3□□□□□ -2.2
LHX3Q9UBR4 RNU7-128P-201ENST00000517247 62 ntBASIC1.3□□□□□ -2.2
LHX3Q9UBR4 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.3□□□□□ -2.2
LHX3Q9UBR4 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.3□□□□□ -2.2
LHX3Q9UBR4 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.3□□□□□ -2.2
LHX3Q9UBR4 MIR4438-201ENST00000585271 93 ntBASIC1.3□□□□□ -2.2
LHX3Q9UBR4 AL355073.2-201ENST00000612106 557 ntBASIC1.3□□□□□ -2.2
LHX3Q9UBR4 AC104260.1-201ENST00000616660 539 ntBASIC1.3□□□□□ -2.2
LHX3Q9UBR4 AL353770.2-201ENST00000620024 78 ntBASIC1.3□□□□□ -2.2
LHX3Q9UBR4 MIR8054-201ENST00000620877 86 ntBASIC1.3□□□□□ -2.2
LHX3Q9UBR4 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
LHX3Q9UBR4 AL391987.6-201ENST00000305671 199 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 RNU6-1283P-201ENST00000365314 105 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 RNU6-1264P-201ENST00000383891 107 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 Y_RNA.474-201ENST00000384341 102 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 RNU6-1065P-201ENST00000384513 106 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 RNU6-1031P-201ENST00000384773 107 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 RNU6-440P-201ENST00000390882 105 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 AC114482.1-201ENST00000418010 247 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 AL135790.2-201ENST00000437701 267 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 MRPS10P1-201ENST00000448483 130 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 RPL30P15-201ENST00000457129 321 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.29□□□□□ -2.2
LHX3Q9UBR4 RNU7-94P-201ENST00000459576 63 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.29□□□□□ -2.2
LHX3Q9UBR4 AC099513.1-201ENST00000490423 301 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 AC022493.2-201ENST00000506122 481 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.29□□□□□ -2.2
LHX3Q9UBR4 RNU6-1053P-201ENST00000515930 101 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 RNU6-559P-201ENST00000516151 98 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 SNORA31.10-201ENST00000516482 106 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 RNU6-264P-201ENST00000517134 104 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 AC018448.1-201ENST00000552843 316 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 MIR5690-201ENST00000583739 73 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 AL157834.3-201ENST00000615543 103 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 AC073544.1-201ENST00000600110 1595 ntBASIC1.29□□□□□ -2.2
LHX3Q9UBR4 RNA5SP259-201ENST00000365541 109 ntBASIC1.28□□□□□ -2.2
LHX3Q9UBR4 RNU6-890P-201ENST00000384121 107 ntBASIC1.28□□□□□ -2.2
LHX3Q9UBR4 Y_RNA.498-201ENST00000384460 102 ntBASIC1.28□□□□□ -2.2
LHX3Q9UBR4 MTCYBP4-201ENST00000401524 249 ntBASIC1.28□□□□□ -2.2
LHX3Q9UBR4 RNU6-1156P-201ENST00000410365 100 ntBASIC1.28□□□□□ -2.2
LHX3Q9UBR4 SNX2P2-201ENST00000424553 323 ntBASIC1.28□□□□□ -2.2
LHX3Q9UBR4 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.28□□□□□ -2.2
LHX3Q9UBR4 AL163540.1-201ENST00000485382 386 ntBASIC1.28□□□□□ -2.2
LHX3Q9UBR4 AC074133.1-201ENST00000515696 183 ntBASIC1.28□□□□□ -2.2
LHX3Q9UBR4 MIR3684-201ENST00000579779 74 ntBASIC1.28□□□□□ -2.2
LHX3Q9UBR4 AC005730.3-201ENST00000583067 366 ntBASIC1.28□□□□□ -2.2
LHX3Q9UBR4 AC113139.1-201ENST00000605049 239 ntBASIC1.28□□□□□ -2.2
LHX3Q9UBR4 AL359821.1-201ENST00000605519 182 ntBASIC1.28□□□□□ -2.2
LHX3Q9UBR4 AC021506.2-201ENST00000612354 169 ntBASIC1.28□□□□□ -2.2
LHX3Q9UBR4 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.28□□□□□ -2.2
LHX3Q9UBR4 AC040896.1-201ENST00000613819 479 ntBASIC1.28□□□□□ -2.2
LHX3Q9UBR4 AL078604.3-201ENST00000615580 211 ntBASIC1.28□□□□□ -2.2
LHX3Q9UBR4 SNORA20B-201ENST00000384220 132 ntBASIC1.27□□□□□ -2.21
LHX3Q9UBR4 RNU11-5P-201ENST00000391216 129 ntBASIC1.27□□□□□ -2.21
LHX3Q9UBR4 SNORA75.6-201ENST00000391318 127 ntBASIC1.27□□□□□ -2.21
LHX3Q9UBR4 AL355796.1-201ENST00000406706 323 ntBASIC1.27□□□□□ -2.21
LHX3Q9UBR4 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.27□□□□□ -2.21
LHX3Q9UBR4 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.27□□□□□ -2.21
LHX3Q9UBR4 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.27□□□□□ -2.21
LHX3Q9UBR4 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.27□□□□□ -2.21
LHX3Q9UBR4 MTCO3P10-201ENST00000455912 772 ntBASIC1.27□□□□□ -2.21
LHX3Q9UBR4 RNU6-625P-201ENST00000459412 107 ntBASIC1.27□□□□□ -2.21
LHX3Q9UBR4 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.27□□□□□ -2.21
LHX3Q9UBR4 AC105758.1-201ENST00000506038 399 ntBASIC1.27□□□□□ -2.21
LHX3Q9UBR4 SNORA40.9-201ENST00000515895 93 ntBASIC1.27□□□□□ -2.21
LHX3Q9UBR4 RN7SKP49-201ENST00000516675 260 ntBASIC1.27□□□□□ -2.21
LHX3Q9UBR4 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.27□□□□□ -2.21
LHX3Q9UBR4 AP002001.1-203ENST00000534002 267 ntBASIC1.27□□□□□ -2.21
LHX3Q9UBR4 AL365434.2-201ENST00000607979 234 ntBASIC1.27□□□□□ -2.21
LHX3Q9UBR4 MIR7974-201ENST00000615835 79 ntBASIC1.27□□□□□ -2.21
LHX3Q9UBR4 AC087588.2-201ENST00000617667 426 ntBASIC1.27□□□□□ -2.21
LHX3Q9UBR4 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
LHX3Q9UBR4 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.27□□□□□ -2.21
LHX3Q9UBR4 AC018630.2-201ENST00000534866 2403 ntBASIC1.26□□□□□ -2.21
LHX3Q9UBR4 RNU6-1301P-201ENST00000362724 104 ntBASIC1.26□□□□□ -2.21
LHX3Q9UBR4 Y_RNA.142-201ENST00000363491 102 ntBASIC1.26□□□□□ -2.21
LHX3Q9UBR4 RNY3P11-201ENST00000364153 102 ntBASIC1.26□□□□□ -2.21
LHX3Q9UBR4 AL034345.1-201ENST00000407768 123 ntBASIC1.26□□□□□ -2.21
LHX3Q9UBR4 SNORD12B-201ENST00000410433 91 ntBASIC1.26□□□□□ -2.21
LHX3Q9UBR4 RNU6-955P-201ENST00000410497 104 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms