Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AL050343.2-201ENST00000607338 280 ntBASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 AC022306.2-201ENST00000617563 647 ntBASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 AL121890.5-201ENST00000620848 304 ntBASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 MIR8054-201ENST00000620877 86 ntBASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 TPTEP1-208ENST00000636884 213 ntBASIC1.35□□□□□ -2.19
VPS54Q9P1Q0 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.34□□□□□ -2.19
VPS54Q9P1Q0 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
VPS54Q9P1Q0 SNORD33-201ENST00000362761 85 ntBASIC1.34□□□□□ -2.19
VPS54Q9P1Q0 Y_RNA.166-201ENST00000363730 102 ntBASIC1.34□□□□□ -2.19
VPS54Q9P1Q0 AL355796.1-201ENST00000406706 323 ntBASIC1.34□□□□□ -2.19
VPS54Q9P1Q0 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.34□□□□□ -2.19
VPS54Q9P1Q0 RPS27P16-201ENST00000425758 201 ntBASIC1.34□□□□□ -2.19
VPS54Q9P1Q0 TOMM22P2-201ENST00000430735 237 ntBASIC1.34□□□□□ -2.19
VPS54Q9P1Q0 AC010598.1-201ENST00000510378 103 ntBASIC1.34□□□□□ -2.19
VPS54Q9P1Q0 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.34□□□□□ -2.19
VPS54Q9P1Q0 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.34□□□□□ -2.19
VPS54Q9P1Q0 AC104260.1-201ENST00000616660 539 ntBASIC1.34□□□□□ -2.19
VPS54Q9P1Q0 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.34□□□□□ -2.19
VPS54Q9P1Q0 RNU6-53P-201ENST00000365367 106 ntBASIC1.33□□□□□ -2.2
VPS54Q9P1Q0 SNORD26-201ENST00000384147 75 ntBASIC1.33□□□□□ -2.2
VPS54Q9P1Q0 SNORA20B-201ENST00000384220 132 ntBASIC1.33□□□□□ -2.2
VPS54Q9P1Q0 RNU6-318P-201ENST00000384283 103 ntBASIC1.33□□□□□ -2.2
VPS54Q9P1Q0 Y_RNA.498-201ENST00000384460 102 ntBASIC1.33□□□□□ -2.2
VPS54Q9P1Q0 RNU6-1031P-201ENST00000384773 107 ntBASIC1.33□□□□□ -2.2
VPS54Q9P1Q0 RNU6-440P-201ENST00000390882 105 ntBASIC1.33□□□□□ -2.2
VPS54Q9P1Q0 Y_RNA.646-201ENST00000410980 101 ntBASIC1.33□□□□□ -2.2
VPS54Q9P1Q0 RNU6-370P-201ENST00000411008 104 ntBASIC1.33□□□□□ -2.2
VPS54Q9P1Q0 AC245047.3-201ENST00000429428 127 ntBASIC1.33□□□□□ -2.2
VPS54Q9P1Q0 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.33□□□□□ -2.2
VPS54Q9P1Q0 UBE2V1P7-201ENST00000446395 340 ntBASIC1.33□□□□□ -2.2
VPS54Q9P1Q0 Y_RNA.635-201ENST00000459041 101 ntBASIC1.33□□□□□ -2.2
VPS54Q9P1Q0 CYCSP23-201ENST00000519781 313 ntBASIC1.33□□□□□ -2.2
VPS54Q9P1Q0 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC1.33□□□□□ -2.2
VPS54Q9P1Q0 AC018448.1-201ENST00000552843 316 ntBASIC1.33□□□□□ -2.2
VPS54Q9P1Q0 AC122108.2-201ENST00000611946 526 ntBASIC1.33□□□□□ -2.2
VPS54Q9P1Q0 AC021506.2-201ENST00000612354 169 ntBASIC1.33□□□□□ -2.2
VPS54Q9P1Q0 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.33□□□□□ -2.2
VPS54Q9P1Q0 AL078604.3-201ENST00000615580 211 ntBASIC1.33□□□□□ -2.2
VPS54Q9P1Q0 Y_RNA.327-201ENST00000365201 102 ntBASIC1.32□□□□□ -2.2
VPS54Q9P1Q0 RNU6-1264P-201ENST00000383891 107 ntBASIC1.32□□□□□ -2.2
VPS54Q9P1Q0 RNU6-310P-201ENST00000384655 107 ntBASIC1.32□□□□□ -2.2
VPS54Q9P1Q0 MRPL42P3-201ENST00000401492 326 ntBASIC1.32□□□□□ -2.2
VPS54Q9P1Q0 MRPS10P1-201ENST00000448483 130 ntBASIC1.32□□□□□ -2.2
VPS54Q9P1Q0 MIR2053-201ENST00000459295 91 ntBASIC1.32□□□□□ -2.2
VPS54Q9P1Q0 RPL31P58-201ENST00000469001 379 ntBASIC1.32□□□□□ -2.2
VPS54Q9P1Q0 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.32□□□□□ -2.2
VPS54Q9P1Q0 RNU6-307P-201ENST00000516743 106 ntBASIC1.32□□□□□ -2.2
VPS54Q9P1Q0 SUMO2P16-201ENST00000519475 264 ntBASIC1.32□□□□□ -2.2
VPS54Q9P1Q0 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.32□□□□□ -2.2
VPS54Q9P1Q0 AC008269.2-201ENST00000561915 1105 ntBASIC1.32□□□□□ -2.2
VPS54Q9P1Q0 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
VPS54Q9P1Q0 AL359821.1-201ENST00000605519 182 ntBASIC1.32□□□□□ -2.2
VPS54Q9P1Q0 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.32□□□□□ -2.2
VPS54Q9P1Q0 AC073544.1-201ENST00000600110 1595 ntBASIC1.32□□□□□ -2.2
VPS54Q9P1Q0 RNA5SP259-201ENST00000365541 109 ntBASIC1.31□□□□□ -2.2
VPS54Q9P1Q0 Y_RNA.390-201ENST00000383932 102 ntBASIC1.31□□□□□ -2.2
VPS54Q9P1Q0 MIR513A1-201ENST00000385138 129 ntBASIC1.31□□□□□ -2.2
VPS54Q9P1Q0 RN7SKP200-201ENST00000410564 320 ntBASIC1.31□□□□□ -2.2
VPS54Q9P1Q0 AC138393.2-201ENST00000414742 246 ntBASIC1.31□□□□□ -2.2
VPS54Q9P1Q0 AC114482.1-201ENST00000418010 247 ntBASIC1.31□□□□□ -2.2
VPS54Q9P1Q0 AC092473.1-201ENST00000441098 221 ntBASIC1.31□□□□□ -2.2
VPS54Q9P1Q0 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.31□□□□□ -2.2
VPS54Q9P1Q0 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.31□□□□□ -2.2
VPS54Q9P1Q0 RN7SKP49-201ENST00000516675 260 ntBASIC1.31□□□□□ -2.2
VPS54Q9P1Q0 AP002001.1-203ENST00000534002 267 ntBASIC1.31□□□□□ -2.2
VPS54Q9P1Q0 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.31□□□□□ -2.2
VPS54Q9P1Q0 AL365434.2-201ENST00000607979 234 ntBASIC1.31□□□□□ -2.2
VPS54Q9P1Q0 MIR6078-201ENST00000611069 100 ntBASIC1.31□□□□□ -2.2
VPS54Q9P1Q0 AL021879.1-201ENST00000611756 288 ntBASIC1.31□□□□□ -2.2
VPS54Q9P1Q0 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.31□□□□□ -2.2
VPS54Q9P1Q0 AC091812.1-201ENST00000432235 1948 ntBASIC1.3□□□□□ -2.2
VPS54Q9P1Q0 RNU6-1188P-201ENST00000363795 107 ntBASIC1.3□□□□□ -2.2
VPS54Q9P1Q0 RNU6-950P-201ENST00000384651 107 ntBASIC1.3□□□□□ -2.2
VPS54Q9P1Q0 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.3□□□□□ -2.2
VPS54Q9P1Q0 RBMX2P4-201ENST00000441256 376 ntBASIC1.3□□□□□ -2.2
VPS54Q9P1Q0 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.3□□□□□ -2.2
VPS54Q9P1Q0 AC022493.2-201ENST00000506122 481 ntBASIC1.3□□□□□ -2.2
VPS54Q9P1Q0 AC074133.1-201ENST00000515696 183 ntBASIC1.3□□□□□ -2.2
VPS54Q9P1Q0 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.3□□□□□ -2.2
VPS54Q9P1Q0 SNORA40.9-201ENST00000515895 93 ntBASIC1.3□□□□□ -2.2
VPS54Q9P1Q0 MIR5690-201ENST00000583739 73 ntBASIC1.3□□□□□ -2.2
VPS54Q9P1Q0 AL390123.1-201ENST00000603216 237 ntBASIC1.3□□□□□ -2.2
VPS54Q9P1Q0 AC080078.3-201ENST00000605407 463 ntBASIC1.3□□□□□ -2.2
VPS54Q9P1Q0 AL355073.2-201ENST00000612106 557 ntBASIC1.3□□□□□ -2.2
VPS54Q9P1Q0 AC006435.5-201ENST00000624486 112 ntBASIC1.3□□□□□ -2.2
VPS54Q9P1Q0 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.3□□□□□ -2.2
VPS54Q9P1Q0 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 RNU6-454P-201ENST00000364292 107 ntBASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 RNU6-407P-201ENST00000365280 104 ntBASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 Y_RNA.474-201ENST00000384341 102 ntBASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 RNU6-1065P-201ENST00000384513 106 ntBASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 SNORA12.1-201ENST00000390873 148 ntBASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 MTCYBP4-201ENST00000401524 249 ntBASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 RNU6-1156P-201ENST00000410365 100 ntBASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 AL591704.2-201ENST00000421658 181 ntBASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 SNX2P2-201ENST00000424553 323 ntBASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 AC098614.3-201ENST00000438957 440 ntBASIC1.29□□□□□ -2.2
VPS54Q9P1Q0 RNU6-625P-201ENST00000459412 107 ntBASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 127.9 ms