Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 MIR628-201ENST00000385229 95 ntBASIC1.67□□□□□ -2.14
CCDC3Q9BQI4 SNORA67.5-201ENST00000391036 107 ntBASIC1.67□□□□□ -2.14
CCDC3Q9BQI4 RNU4-62P-201ENST00000410125 130 ntBASIC1.67□□□□□ -2.14
CCDC3Q9BQI4 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC3Q9BQI4 SDAD1P3-201ENST00000427380 333 ntBASIC1.67□□□□□ -2.14
CCDC3Q9BQI4 RNU6-625P-201ENST00000459412 107 ntBASIC1.67□□□□□ -2.14
CCDC3Q9BQI4 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.67□□□□□ -2.14
CCDC3Q9BQI4 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.67□□□□□ -2.14
CCDC3Q9BQI4 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.67□□□□□ -2.14
CCDC3Q9BQI4 MIR4255-201ENST00000579351 72 ntBASIC1.67□□□□□ -2.14
CCDC3Q9BQI4 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
CCDC3Q9BQI4 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
CCDC3Q9BQI4 Y_RNA.128-201ENST00000363391 112 ntBASIC1.66□□□□□ -2.14
CCDC3Q9BQI4 Y_RNA.361-201ENST00000365515 120 ntBASIC1.66□□□□□ -2.14
CCDC3Q9BQI4 Y_RNA.419-201ENST00000384041 102 ntBASIC1.66□□□□□ -2.14
CCDC3Q9BQI4 RNY1P14-201ENST00000384426 108 ntBASIC1.66□□□□□ -2.14
CCDC3Q9BQI4 MIR1302-11-201ENST00000408051 138 ntBASIC1.66□□□□□ -2.14
CCDC3Q9BQI4 MIR1253-201ENST00000408273 105 ntBASIC1.66□□□□□ -2.14
CCDC3Q9BQI4 MIR1302-9-201ENST00000408365 138 ntBASIC1.66□□□□□ -2.14
CCDC3Q9BQI4 MIR1302-10-201ENST00000408734 138 ntBASIC1.66□□□□□ -2.14
CCDC3Q9BQI4 RAB28P5-201ENST00000427490 651 ntBASIC1.66□□□□□ -2.14
CCDC3Q9BQI4 AC245047.4-201ENST00000433189 144 ntBASIC1.66□□□□□ -2.14
CCDC3Q9BQI4 SNORD65B-201ENST00000459126 73 ntBASIC1.66□□□□□ -2.14
CCDC3Q9BQI4 AL137100.2-201ENST00000555786 315 ntBASIC1.66□□□□□ -2.14
CCDC3Q9BQI4 AC006600.1-201ENST00000572529 153 ntBASIC1.66□□□□□ -2.14
CCDC3Q9BQI4 MIR5094-201ENST00000578766 85 ntBASIC1.66□□□□□ -2.14
CCDC3Q9BQI4 MIR4303-201ENST00000581299 66 ntBASIC1.66□□□□□ -2.14
CCDC3Q9BQI4 MIR5188-201ENST00000583467 113 ntBASIC1.66□□□□□ -2.14
CCDC3Q9BQI4 MIR1302-2-201ENST00000607096 138 ntBASIC1.66□□□□□ -2.14
CCDC3Q9BQI4 AC006001.4-201ENST00000622243 395 ntBASIC1.66□□□□□ -2.14
CCDC3Q9BQI4 AC006026.1-201ENST00000444025 1803 ntBASIC1.66□□□□□ -2.14
CCDC3Q9BQI4 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.65□□□□□ -2.14
CCDC3Q9BQI4 AC010615.1-201ENST00000594254 1764 ntBASIC1.65□□□□□ -2.14
CCDC3Q9BQI4 Y_RNA.230-201ENST00000364348 109 ntBASIC1.65□□□□□ -2.15
CCDC3Q9BQI4 Y_RNA.243-201ENST00000364481 109 ntBASIC1.65□□□□□ -2.15
CCDC3Q9BQI4 MIR520A-201ENST00000384862 85 ntBASIC1.65□□□□□ -2.15
CCDC3Q9BQI4 RNA5SP475-201ENST00000410568 110 ntBASIC1.65□□□□□ -2.15
CCDC3Q9BQI4 RNU7-169P-201ENST00000459456 61 ntBASIC1.65□□□□□ -2.15
CCDC3Q9BQI4 RPS26P45-201ENST00000471748 340 ntBASIC1.65□□□□□ -2.15
CCDC3Q9BQI4 RNU6-107P-201ENST00000516643 102 ntBASIC1.65□□□□□ -2.15
CCDC3Q9BQI4 AC084364.2-201ENST00000546924 395 ntBASIC1.65□□□□□ -2.15
CCDC3Q9BQI4 AC024614.2-201ENST00000577584 372 ntBASIC1.65□□□□□ -2.15
CCDC3Q9BQI4 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.65□□□□□ -2.15
CCDC3Q9BQI4 MIR4781-201ENST00000585250 76 ntBASIC1.65□□□□□ -2.15
CCDC3Q9BQI4 SNORD58B-201ENST00000607313 66 ntBASIC1.65□□□□□ -2.15
CCDC3Q9BQI4 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.65□□□□□ -2.15
CCDC3Q9BQI4 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.65□□□□□ -2.15
CCDC3Q9BQI4 U6.73-201ENST00000619194 103 ntBASIC1.65□□□□□ -2.15
CCDC3Q9BQI4 AC134503.1-201ENST00000633048 54 ntBASIC1.65□□□□□ -2.15
CCDC3Q9BQI4 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.65□□□□□ -2.15
CCDC3Q9BQI4 Y_RNA.80-201ENST00000362996 102 ntBASIC1.64□□□□□ -2.15
CCDC3Q9BQI4 RNY3P11-201ENST00000364153 102 ntBASIC1.64□□□□□ -2.15
CCDC3Q9BQI4 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.64□□□□□ -2.15
CCDC3Q9BQI4 AP1B1P2-201ENST00000416196 106 ntBASIC1.64□□□□□ -2.15
CCDC3Q9BQI4 AL160004.2-201ENST00000432935 350 ntBASIC1.64□□□□□ -2.15
CCDC3Q9BQI4 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.64□□□□□ -2.15
CCDC3Q9BQI4 HSPE1P21-201ENST00000438283 308 ntBASIC1.64□□□□□ -2.15
CCDC3Q9BQI4 MTND4P19-201ENST00000446659 478 ntBASIC1.64□□□□□ -2.15
CCDC3Q9BQI4 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.64□□□□□ -2.15
CCDC3Q9BQI4 AC010409.1-201ENST00000487382 476 ntBASIC1.64□□□□□ -2.15
CCDC3Q9BQI4 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.64□□□□□ -2.15
CCDC3Q9BQI4 Y_RNA.713-201ENST00000517013 96 ntBASIC1.64□□□□□ -2.15
CCDC3Q9BQI4 AP002001.1-203ENST00000534002 267 ntBASIC1.64□□□□□ -2.15
CCDC3Q9BQI4 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.64□□□□□ -2.15
CCDC3Q9BQI4 MIR3122-201ENST00000577243 73 ntBASIC1.64□□□□□ -2.15
CCDC3Q9BQI4 AL121655.1-201ENST00000605811 308 ntBASIC1.64□□□□□ -2.15
CCDC3Q9BQI4 AC103810.8-201ENST00000607347 118 ntBASIC1.64□□□□□ -2.15
CCDC3Q9BQI4 AL359075.3-201ENST00000613288 217 ntBASIC1.64□□□□□ -2.15
CCDC3Q9BQI4 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.64□□□□□ -2.15
CCDC3Q9BQI4 Y_RNA.28-201ENST00000362554 111 ntBASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 RNU4-76P-201ENST00000364509 141 ntBASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 Y_RNA.462-201ENST00000384268 102 ntBASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 RNU6-417P-201ENST00000384712 107 ntBASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 RNU6-360P-201ENST00000390944 104 ntBASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 RNU11-5P-201ENST00000391216 129 ntBASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 MCFD2P1-201ENST00000417812 300 ntBASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 EBAG9P1-201ENST00000418955 543 ntBASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 Y_RNA.631-201ENST00000459607 101 ntBASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 AL163540.1-201ENST00000485382 386 ntBASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 RNU6-408P-201ENST00000515910 100 ntBASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 SNORA25.10-201ENST00000515926 124 ntBASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 Y_RNA.661-201ENST00000516003 99 ntBASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 RNU7-99P-201ENST00000516271 62 ntBASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 RNA5SP481-201ENST00000516814 122 ntBASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 MIR4659A-201ENST00000580269 81 ntBASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 AC240442.1-201ENST00000616055 283 ntBASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 U6.115-201ENST00000636045 103 ntBASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 U6.92-201ENST00000636464 89 ntBASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 U6.108-201ENST00000637764 58 ntBASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
CCDC3Q9BQI4 WWP1P1-201ENST00000466609 2769 ntBASIC1.62□□□□□ -2.15
CCDC3Q9BQI4 RNU6-271P-201ENST00000363858 105 ntBASIC1.62□□□□□ -2.15
CCDC3Q9BQI4 RNU6-454P-201ENST00000364292 107 ntBASIC1.62□□□□□ -2.15
CCDC3Q9BQI4 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.62□□□□□ -2.15
CCDC3Q9BQI4 PMCHL1-202ENST00000423102 261 ntBASIC1.62□□□□□ -2.15
CCDC3Q9BQI4 AC010154.1-201ENST00000425857 269 ntBASIC1.62□□□□□ -2.15
CCDC3Q9BQI4 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 169.6 ms