Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC2.51□□□□□ -2.01
NUP88Q99567 AC096920.1-201ENST00000423991 241 ntBASIC2.51□□□□□ -2.01
NUP88Q99567 AL353689.1-201ENST00000438895 199 ntBASIC2.51□□□□□ -2.01
NUP88Q99567 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.51□□□□□ -2.01
NUP88Q99567 HMGB3P17-201ENST00000504195 649 ntBASIC2.51□□□□□ -2.01
NUP88Q99567 AC010598.1-201ENST00000510378 103 ntBASIC2.51□□□□□ -2.01
NUP88Q99567 SCARNA16.3-201ENST00000516595 184 ntBASIC2.51□□□□□ -2.01
NUP88Q99567 AC023157.2-201ENST00000540596 141 ntBASIC2.51□□□□□ -2.01
NUP88Q99567 AC007229.1-201ENST00000590455 412 ntBASIC2.51□□□□□ -2.01
NUP88Q99567 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
NUP88Q99567 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.51□□□□□ -2.01
NUP88Q99567 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.5□□□□□ -2.01
NUP88Q99567 RNU4-90P-201ENST00000362773 141 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 Y_RNA.222-201ENST00000364264 102 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 RNA5SP323-201ENST00000391094 133 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 AL031003.1-201ENST00000404229 172 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 SNORD23.1-201ENST00000408212 104 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 MTND3P2-201ENST00000438452 342 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 SUMO1P2-201ENST00000452524 304 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 AC010409.1-201ENST00000487382 476 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 SNORA31.25-201ENST00000517242 134 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
NUP88Q99567 AL137100.2-201ENST00000555786 315 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 AC005786.1-201ENST00000588553 154 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 U2.15-201ENST00000611544 191 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 U2.16-201ENST00000613119 191 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 U2.12-201ENST00000613778 191 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 U2.20-201ENST00000613956 192 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 U2.9-201ENST00000615427 191 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 U2.11-201ENST00000616345 191 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 U2.2-201ENST00000616535 191 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 U2.3-201ENST00000617785 191 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 U2.19-201ENST00000618602 191 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 RNU2-1-201ENST00000618664 191 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 U2.6-201ENST00000619225 191 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 U2.5-201ENST00000619465 191 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 U2.10-201ENST00000620268 191 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.5□□□□□ -2.01
NUP88Q99567 U6.104-201ENST00000637979 90 ntBASIC2.5□□□□□ -2.01
NUP88Q99567 RNU6-862P-201ENST00000362804 105 ntBASIC2.49□□□□□ -2.01
NUP88Q99567 RNU6-271P-201ENST00000363858 105 ntBASIC2.49□□□□□ -2.01
NUP88Q99567 SNORD115-30-201ENST00000364117 82 ntBASIC2.49□□□□□ -2.01
NUP88Q99567 RNU1-96P-201ENST00000364163 162 ntBASIC2.49□□□□□ -2.01
NUP88Q99567 Y_RNA.286-201ENST00000364813 102 ntBASIC2.49□□□□□ -2.01
NUP88Q99567 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
NUP88Q99567 AL355796.1-201ENST00000406706 323 ntBASIC2.49□□□□□ -2.01
NUP88Q99567 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC2.49□□□□□ -2.01
NUP88Q99567 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.49□□□□□ -2.01
NUP88Q99567 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.49□□□□□ -2.01
NUP88Q99567 AC025465.3-201ENST00000510570 311 ntBASIC2.49□□□□□ -2.01
NUP88Q99567 RNU6-237P-201ENST00000515985 71 ntBASIC2.49□□□□□ -2.01
NUP88Q99567 SNORA70.12-201ENST00000516084 153 ntBASIC2.49□□□□□ -2.01
NUP88Q99567 RNA5SP200-201ENST00000516360 103 ntBASIC2.49□□□□□ -2.01
NUP88Q99567 RNU6-966P-201ENST00000516479 104 ntBASIC2.49□□□□□ -2.01
NUP88Q99567 AC078899.2-201ENST00000595282 212 ntBASIC2.49□□□□□ -2.01
NUP88Q99567 AC037487.3-201ENST00000606668 112 ntBASIC2.49□□□□□ -2.01
NUP88Q99567 AC012640.5-201ENST00000623897 319 ntBASIC2.49□□□□□ -2.01
NUP88Q99567 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
NUP88Q99567 Y_RNA.243-201ENST00000364481 109 ntBASIC2.48□□□□□ -2.01
NUP88Q99567 Y_RNA.329-201ENST00000365209 107 ntBASIC2.48□□□□□ -2.01
NUP88Q99567 Y_RNA.383-201ENST00000383855 97 ntBASIC2.48□□□□□ -2.01
NUP88Q99567 RNU6-102P-201ENST00000384485 104 ntBASIC2.48□□□□□ -2.01
NUP88Q99567 MIR215-201ENST00000384858 110 ntBASIC2.48□□□□□ -2.01
NUP88Q99567 MIR1302-6-201ENST00000408466 90 ntBASIC2.48□□□□□ -2.01
NUP88Q99567 MIR1283-2-201ENST00000408621 87 ntBASIC2.48□□□□□ -2.01
NUP88Q99567 RNU6-1186P-201ENST00000410429 97 ntBASIC2.48□□□□□ -2.01
NUP88Q99567 AC024067.1-201ENST00000426199 223 ntBASIC2.48□□□□□ -2.01
NUP88Q99567 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.48□□□□□ -2.01
NUP88Q99567 AC104435.1-201ENST00000483483 166 ntBASIC2.48□□□□□ -2.01
NUP88Q99567 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.48□□□□□ -2.01
NUP88Q99567 AC009127.3-201ENST00000570531 403 ntBASIC2.48□□□□□ -2.01
NUP88Q99567 MIR4438-201ENST00000585271 93 ntBASIC2.48□□□□□ -2.01
NUP88Q99567 AC010615.1-201ENST00000594254 1764 ntBASIC2.48□□□□□ -2.01
NUP88Q99567 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
NUP88Q99567 Y_RNA.461-201ENST00000384263 103 ntBASIC2.47□□□□□ -2.01
NUP88Q99567 Y_RNA.581-201ENST00000391017 97 ntBASIC2.47□□□□□ -2.01
NUP88Q99567 MIR873-201ENST00000401120 77 ntBASIC2.47□□□□□ -2.01
NUP88Q99567 RNU2-2P-201ENST00000410396 191 ntBASIC2.47□□□□□ -2.01
NUP88Q99567 RNU6-1199P-201ENST00000411249 104 ntBASIC2.47□□□□□ -2.01
NUP88Q99567 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.47□□□□□ -2.01
NUP88Q99567 MTCO2P24-201ENST00000515611 426 ntBASIC2.47□□□□□ -2.01
NUP88Q99567 RNU6-496P-201ENST00000516145 99 ntBASIC2.47□□□□□ -2.01
NUP88Q99567 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC2.47□□□□□ -2.01
NUP88Q99567 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.47□□□□□ -2.01
NUP88Q99567 MIR5094-201ENST00000578766 85 ntBASIC2.47□□□□□ -2.01
NUP88Q99567 MIR6132-201ENST00000622083 109 ntBASIC2.47□□□□□ -2.01
NUP88Q99567 AC006435.5-201ENST00000624486 112 ntBASIC2.47□□□□□ -2.01
NUP88Q99567 MIR338-201ENST00000636369 67 ntBASIC2.47□□□□□ -2.01
NUP88Q99567 MIR219B-201ENST00000637023 88 ntBASIC2.47□□□□□ -2.01
NUP88Q99567 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
NUP88Q99567 SNORA27.1-201ENST00000362604 124 ntBASIC2.46□□□□□ -2.02
NUP88Q99567 Y_RNA.133-201ENST00000363428 110 ntBASIC2.46□□□□□ -2.02
NUP88Q99567 SNORA53-201ENST00000391141 249 ntBASIC2.46□□□□□ -2.02
NUP88Q99567 AL139156.1-201ENST00000412785 841 ntBASIC2.46□□□□□ -2.02
NUP88Q99567 MRPS10P1-201ENST00000448483 130 ntBASIC2.46□□□□□ -2.02
NUP88Q99567 RNA5SP20-201ENST00000515976 84 ntBASIC2.46□□□□□ -2.02
NUP88Q99567 MYL12BP1-201ENST00000569826 507 ntBASIC2.46□□□□□ -2.02
NUP88Q99567 MIR3145-201ENST00000580727 82 ntBASIC2.46□□□□□ -2.02
NUP88Q99567 DEFB117-201ENST00000602356 141 ntBASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 229.3 ms