Protein–RNA interactions for Protein: Q96KN3

PKNOX2, Homeobox protein PKNOX2, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX2Q96KN3 RNU6-392P-201ENST00000364926 101 ntBASIC0.82□□□□□ -2.28
PKNOX2Q96KN3 AC245047.7-201ENST00000440265 293 ntBASIC0.82□□□□□ -2.28
PKNOX2Q96KN3 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC0.82□□□□□ -2.28
PKNOX2Q96KN3 RNU7-28P-201ENST00000516759 62 ntBASIC0.82□□□□□ -2.28
PKNOX2Q96KN3 RNU7-172P-201ENST00000517125 64 ntBASIC0.82□□□□□ -2.28
PKNOX2Q96KN3 AC245505.1-201ENST00000556398 224 ntBASIC0.82□□□□□ -2.28
PKNOX2Q96KN3 AC090617.10-201ENST00000624308 134 ntBASIC0.82□□□□□ -2.28
PKNOX2Q96KN3 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.82□□□□□ -2.28
PKNOX2Q96KN3 Y_RNA.164-201ENST00000363709 102 ntBASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 SNORA20B-201ENST00000384220 132 ntBASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 MIR562-201ENST00000384894 95 ntBASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 AL451046.2-201ENST00000403074 277 ntBASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 AL355796.1-201ENST00000406706 323 ntBASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 RNU6-321P-201ENST00000410912 106 ntBASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 USP9YP16-201ENST00000430287 407 ntBASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 CALM2P4-201ENST00000430810 426 ntBASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 MTCO2P7-201ENST00000446518 666 ntBASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 USP9YP23-201ENST00000455085 407 ntBASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 COX6CP14-201ENST00000469580 174 ntBASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 AC005840.1-201ENST00000498412 377 ntBASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 AC046134.1-201ENST00000514454 666 ntBASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 RNU6-917P-201ENST00000516294 104 ntBASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 Y_RNA.706-201ENST00000516933 99 ntBASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 RPL21P9-201ENST00000556149 474 ntBASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 MIR3684-201ENST00000579779 74 ntBASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 AC080078.2-201ENST00000603766 501 ntBASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 AC100812.1-201ENST00000607622 580 ntBASIC0.81□□□□□ -2.28
PKNOX2Q96KN3 SNORA2.2-201ENST00000365473 135 ntBASIC0.8□□□□□ -2.28
PKNOX2Q96KN3 Y_RNA.402-201ENST00000383972 102 ntBASIC0.8□□□□□ -2.28
PKNOX2Q96KN3 Y_RNA.517-201ENST00000384551 106 ntBASIC0.8□□□□□ -2.28
PKNOX2Q96KN3 MIR181A1-201ENST00000385026 110 ntBASIC0.8□□□□□ -2.28
PKNOX2Q96KN3 U8.16-201ENST00000391279 133 ntBASIC0.8□□□□□ -2.28
PKNOX2Q96KN3 AC063976.4-201ENST00000421971 163 ntBASIC0.8□□□□□ -2.28
PKNOX2Q96KN3 AC002429.1-201ENST00000437672 148 ntBASIC0.8□□□□□ -2.28
PKNOX2Q96KN3 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.8□□□□□ -2.28
PKNOX2Q96KN3 OR9P1P-201ENST00000496431 281 ntBASIC0.8□□□□□ -2.28
PKNOX2Q96KN3 SNORD79.1-201ENST00000516069 84 ntBASIC0.8□□□□□ -2.28
PKNOX2Q96KN3 Y_RNA.676-201ENST00000516393 96 ntBASIC0.8□□□□□ -2.28
PKNOX2Q96KN3 RNA5SP121-201ENST00000516537 101 ntBASIC0.8□□□□□ -2.28
PKNOX2Q96KN3 RNU6-341P-201ENST00000516973 96 ntBASIC0.8□□□□□ -2.28
PKNOX2Q96KN3 RNU6-1314P-201ENST00000517139 104 ntBASIC0.8□□□□□ -2.28
PKNOX2Q96KN3 AC093023.1-201ENST00000547375 507 ntBASIC0.8□□□□□ -2.28
PKNOX2Q96KN3 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.8□□□□□ -2.28
PKNOX2Q96KN3 AC090617.3-201ENST00000573670 475 ntBASIC0.8□□□□□ -2.28
PKNOX2Q96KN3 AC091178.2-201ENST00000584401 117 ntBASIC0.8□□□□□ -2.28
PKNOX2Q96KN3 AC068790.6-201ENST00000602558 258 ntBASIC0.8□□□□□ -2.28
PKNOX2Q96KN3 MIR6866-201ENST00000638146 69 ntBASIC0.8□□□□□ -2.28
PKNOX2Q96KN3 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
PKNOX2Q96KN3 RNU6-222P-201ENST00000362438 107 ntBASIC0.79□□□□□ -2.28
PKNOX2Q96KN3 Y_RNA.106-201ENST00000363189 100 ntBASIC0.79□□□□□ -2.28
PKNOX2Q96KN3 RNU6-1059P-201ENST00000363752 98 ntBASIC0.79□□□□□ -2.28
PKNOX2Q96KN3 RNU6-1264P-201ENST00000383891 107 ntBASIC0.79□□□□□ -2.28
PKNOX2Q96KN3 MTCYBP4-201ENST00000401524 249 ntBASIC0.79□□□□□ -2.28
PKNOX2Q96KN3 USP9YP30-201ENST00000430729 455 ntBASIC0.79□□□□□ -2.28
PKNOX2Q96KN3 MTND1P17-201ENST00000448961 204 ntBASIC0.79□□□□□ -2.28
PKNOX2Q96KN3 AC091021.1-201ENST00000468051 388 ntBASIC0.79□□□□□ -2.28
PKNOX2Q96KN3 AC022493.2-201ENST00000506122 481 ntBASIC0.79□□□□□ -2.28
PKNOX2Q96KN3 AC018710.1-201ENST00000506509 158 ntBASIC0.79□□□□□ -2.28
PKNOX2Q96KN3 RNU2-56P-201ENST00000516826 190 ntBASIC0.79□□□□□ -2.28
PKNOX2Q96KN3 RNU6-1088P-201ENST00000516850 104 ntBASIC0.79□□□□□ -2.28
PKNOX2Q96KN3 RNU6-273P-201ENST00000516937 96 ntBASIC0.79□□□□□ -2.28
PKNOX2Q96KN3 RNU1-54P-201ENST00000517181 120 ntBASIC0.79□□□□□ -2.28
PKNOX2Q96KN3 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.79□□□□□ -2.28
PKNOX2Q96KN3 AL121579.1-201ENST00000555129 305 ntBASIC0.79□□□□□ -2.28
PKNOX2Q96KN3 MIR4781-201ENST00000585250 76 ntBASIC0.79□□□□□ -2.28
PKNOX2Q96KN3 AL357312.1-201ENST00000603879 298 ntBASIC0.79□□□□□ -2.28
PKNOX2Q96KN3 AC048344.4-201ENST00000619744 527 ntBASIC0.79□□□□□ -2.28
PKNOX2Q96KN3 Y_RNA.4-201ENST00000362333 112 ntBASIC0.78□□□□□ -2.28
PKNOX2Q96KN3 RNY4P14-201ENST00000363656 96 ntBASIC0.78□□□□□ -2.28
PKNOX2Q96KN3 Y_RNA.363-201ENST00000365529 113 ntBASIC0.78□□□□□ -2.28
PKNOX2Q96KN3 RNU6-1013P-201ENST00000384180 107 ntBASIC0.78□□□□□ -2.28
PKNOX2Q96KN3 RNU6-842P-201ENST00000384269 107 ntBASIC0.78□□□□□ -2.28
PKNOX2Q96KN3 RNU6-831P-201ENST00000384548 107 ntBASIC0.78□□□□□ -2.28
PKNOX2Q96KN3 AC009161.1-201ENST00000417306 376 ntBASIC0.78□□□□□ -2.28
PKNOX2Q96KN3 AC114482.1-201ENST00000418010 247 ntBASIC0.78□□□□□ -2.28
PKNOX2Q96KN3 RNU6-947P-201ENST00000516264 106 ntBASIC0.78□□□□□ -2.28
PKNOX2Q96KN3 RNU6-566P-201ENST00000516790 107 ntBASIC0.78□□□□□ -2.28
PKNOX2Q96KN3 AP002004.2-201ENST00000531656 154 ntBASIC0.78□□□□□ -2.28
PKNOX2Q96KN3 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
PKNOX2Q96KN3 Y_RNA.9-201ENST00000362354 101 ntBASIC0.77□□□□□ -2.29
PKNOX2Q96KN3 SNORA1B-201ENST00000362535 133 ntBASIC0.77□□□□□ -2.29
PKNOX2Q96KN3 SNORA27.1-201ENST00000362604 124 ntBASIC0.77□□□□□ -2.29
PKNOX2Q96KN3 Y_RNA.267-201ENST00000364679 109 ntBASIC0.77□□□□□ -2.29
PKNOX2Q96KN3 MIR329-1-201ENST00000385028 80 ntBASIC0.77□□□□□ -2.29
PKNOX2Q96KN3 RNU6-1148P-201ENST00000410992 104 ntBASIC0.77□□□□□ -2.29
PKNOX2Q96KN3 RNU6-1001P-201ENST00000411265 100 ntBASIC0.77□□□□□ -2.29
PKNOX2Q96KN3 ELOCP21-201ENST00000412558 336 ntBASIC0.77□□□□□ -2.29
PKNOX2Q96KN3 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.77□□□□□ -2.29
PKNOX2Q96KN3 AC018865.2-201ENST00000423631 129 ntBASIC0.77□□□□□ -2.29
PKNOX2Q96KN3 EIF1P2-201ENST00000428233 350 ntBASIC0.77□□□□□ -2.29
PKNOX2Q96KN3 MTND4LP16-201ENST00000440828 295 ntBASIC0.77□□□□□ -2.29
PKNOX2Q96KN3 Z83846.1-201ENST00000446798 265 ntBASIC0.77□□□□□ -2.29
PKNOX2Q96KN3 AC093850.1-201ENST00000454121 251 ntBASIC0.77□□□□□ -2.29
PKNOX2Q96KN3 SNORD5.1-201ENST00000458800 75 ntBASIC0.77□□□□□ -2.29
PKNOX2Q96KN3 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.77□□□□□ -2.29
PKNOX2Q96KN3 RNA5SP20-201ENST00000515976 84 ntBASIC0.77□□□□□ -2.29
PKNOX2Q96KN3 RNU7-12P-201ENST00000516030 62 ntBASIC0.77□□□□□ -2.29
PKNOX2Q96KN3 MIR3973-201ENST00000579824 107 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 139.9 ms