Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
CLIP3Q96DZ5 SNORA5B-201ENST00000363786 132 ntBASIC2.85□□□□□ -1.95
CLIP3Q96DZ5 SNORA80A-201ENST00000363922 136 ntBASIC2.85□□□□□ -1.95
CLIP3Q96DZ5 RNU6-899P-201ENST00000363947 107 ntBASIC2.85□□□□□ -1.95
CLIP3Q96DZ5 RNU4-10P-201ENST00000364383 140 ntBASIC2.85□□□□□ -1.95
CLIP3Q96DZ5 Y_RNA.353-201ENST00000365440 108 ntBASIC2.85□□□□□ -1.95
CLIP3Q96DZ5 Y_RNA.572-201ENST00000384757 98 ntBASIC2.85□□□□□ -1.95
CLIP3Q96DZ5 MIR626-201ENST00000385032 94 ntBASIC2.85□□□□□ -1.95
CLIP3Q96DZ5 RNU6-578P-201ENST00000390980 103 ntBASIC2.85□□□□□ -1.95
CLIP3Q96DZ5 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.85□□□□□ -1.95
CLIP3Q96DZ5 AL137159.1-201ENST00000452808 512 ntBASIC2.85□□□□□ -1.95
CLIP3Q96DZ5 SCARNA8-201ENST00000515924 131 ntBASIC2.85□□□□□ -1.95
CLIP3Q96DZ5 RN7SKP164-201ENST00000516138 266 ntBASIC2.85□□□□□ -1.95
CLIP3Q96DZ5 RNU6-971P-201ENST00000516920 106 ntBASIC2.85□□□□□ -1.95
CLIP3Q96DZ5 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.85□□□□□ -1.95
CLIP3Q96DZ5 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.85□□□□□ -1.95
CLIP3Q96DZ5 MIR4744-201ENST00000581563 82 ntBASIC2.85□□□□□ -1.95
CLIP3Q96DZ5 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
CLIP3Q96DZ5 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.84□□□□□ -1.95
CLIP3Q96DZ5 Y_RNA.71-201ENST00000362892 104 ntBASIC2.84□□□□□ -1.95
CLIP3Q96DZ5 Y_RNA.127-201ENST00000363386 109 ntBASIC2.84□□□□□ -1.95
CLIP3Q96DZ5 RNU6-1048P-201ENST00000364054 107 ntBASIC2.84□□□□□ -1.95
CLIP3Q96DZ5 Y_RNA.273-201ENST00000364703 102 ntBASIC2.84□□□□□ -1.95
CLIP3Q96DZ5 RNU4-11P-201ENST00000365287 132 ntBASIC2.84□□□□□ -1.95
CLIP3Q96DZ5 SNORA40-201ENST00000388090 126 ntBASIC2.84□□□□□ -1.95
CLIP3Q96DZ5 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.84□□□□□ -1.95
CLIP3Q96DZ5 AC107083.1-201ENST00000439643 279 ntBASIC2.84□□□□□ -1.95
CLIP3Q96DZ5 RPS20P10-201ENST00000451209 253 ntBASIC2.84□□□□□ -1.95
CLIP3Q96DZ5 NDUFA5P6-201ENST00000542110 379 ntBASIC2.84□□□□□ -1.95
CLIP3Q96DZ5 AC107016.2-201ENST00000547968 190 ntBASIC2.84□□□□□ -1.95
CLIP3Q96DZ5 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.84□□□□□ -1.95
CLIP3Q96DZ5 AC006380.1-201ENST00000603598 186 ntBASIC2.84□□□□□ -1.95
CLIP3Q96DZ5 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
CLIP3Q96DZ5 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 AC134026.1-201ENST00000623249 2239 ntBASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 RNU6-103P-201ENST00000363686 107 ntBASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 RNU6-743P-201ENST00000364151 106 ntBASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 Y_RNA.243-201ENST00000364481 109 ntBASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 SNORD87-201ENST00000364849 89 ntBASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 Y_RNA.361-201ENST00000365515 120 ntBASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 SNORA72.4-201ENST00000384174 132 ntBASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 MIR592-201ENST00000384959 97 ntBASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 AL031003.1-201ENST00000404229 172 ntBASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 RNA5SP274-201ENST00000410484 108 ntBASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 RNU7-14P-201ENST00000459331 62 ntBASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 SNORA25.12-201ENST00000516202 82 ntBASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 RNU6-453P-201ENST00000516819 85 ntBASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 CYCSP26-201ENST00000534107 320 ntBASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
CLIP3Q96DZ5 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
CLIP3Q96DZ5 RNU6-324P-201ENST00000363957 106 ntBASIC2.82□□□□□ -1.96
CLIP3Q96DZ5 SNORA67.2-201ENST00000384300 149 ntBASIC2.82□□□□□ -1.96
CLIP3Q96DZ5 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.82□□□□□ -1.96
CLIP3Q96DZ5 RNU7-197P-201ENST00000458836 62 ntBASIC2.82□□□□□ -1.96
CLIP3Q96DZ5 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.82□□□□□ -1.96
CLIP3Q96DZ5 RN7SL20P-201ENST00000488827 297 ntBASIC2.82□□□□□ -1.96
CLIP3Q96DZ5 RNU6-344P-201ENST00000516635 111 ntBASIC2.82□□□□□ -1.96
CLIP3Q96DZ5 AC109810.1-201ENST00000534066 224 ntBASIC2.82□□□□□ -1.96
CLIP3Q96DZ5 DNAJC19P2-201ENST00000593340 302 ntBASIC2.82□□□□□ -1.96
CLIP3Q96DZ5 MIR6852-201ENST00000621699 66 ntBASIC2.82□□□□□ -1.96
CLIP3Q96DZ5 AC010297.1-201ENST00000623948 149 ntBASIC2.82□□□□□ -1.96
CLIP3Q96DZ5 Y_RNA.368-201ENST00000365547 113 ntBASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 SNORD116-14-201ENST00000383894 92 ntBASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 SNORD116-17-201ENST00000383929 92 ntBASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 RNU6-44P-201ENST00000384045 107 ntBASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 RNU1-138P-201ENST00000384093 164 ntBASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 SNORD116-15-201ENST00000384445 92 ntBASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 RNU6-851P-201ENST00000384565 107 ntBASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 SNORA20-201ENST00000384662 132 ntBASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 SNORD116-19-201ENST00000384729 92 ntBASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 AL355497.1-201ENST00000406262 551 ntBASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 SNORA4.4-201ENST00000515921 135 ntBASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 RNU6-1333P-201ENST00000516162 93 ntBASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 SNORA31.15-201ENST00000516771 132 ntBASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 RNA5SP490-201ENST00000517141 136 ntBASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 AL049779.4-201ENST00000604500 156 ntBASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 AC007318.2-201ENST00000620999 243 ntBASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 AC012640.5-201ENST00000623897 319 ntBASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 AC068205.3-201ENST00000636385 468 ntBASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.81□□□□□ -1.96
CLIP3Q96DZ5 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 Y_RNA.172-201ENST00000363765 102 ntBASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 Y_RNA.287-201ENST00000364853 94 ntBASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 Y_RNA.310-201ENST00000365063 113 ntBASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 SNORA9.2-201ENST00000365361 133 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 170 ms