Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 RNU6-107P-201ENST00000516643 102 ntBASIC1.02□□□□□ -2.25
CCDC54Q8NEL0 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.02□□□□□ -2.25
CCDC54Q8NEL0 MIR4295-201ENST00000585286 85 ntBASIC1.02□□□□□ -2.25
CCDC54Q8NEL0 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.02□□□□□ -2.25
CCDC54Q8NEL0 AC005828.6-201ENST00000606610 232 ntBASIC1.02□□□□□ -2.25
CCDC54Q8NEL0 AL669831.3-213ENST00000636676 183 ntBASIC1.02□□□□□ -2.25
CCDC54Q8NEL0 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 MIR410-201ENST00000362222 80 ntBASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 RNU6-1123P-201ENST00000362347 106 ntBASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 Y_RNA.166-201ENST00000363730 102 ntBASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 RNU6-1283P-201ENST00000365314 105 ntBASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 RNU6-117P-201ENST00000365415 107 ntBASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 RNU6-505P-201ENST00000384427 107 ntBASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 MIR1261-201ENST00000408659 82 ntBASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 RPL30P15-201ENST00000457129 321 ntBASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 RPS27P22-201ENST00000478056 241 ntBASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 AC010598.1-201ENST00000510378 103 ntBASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 APOOP3-201ENST00000536787 586 ntBASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 AC018448.1-201ENST00000552843 316 ntBASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 MIR3664-201ENST00000579074 99 ntBASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 MIR3937-201ENST00000580135 106 ntBASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 AC022306.2-201ENST00000617563 647 ntBASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 U6.115-201ENST00000636045 103 ntBASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 AC018630.2-201ENST00000534866 2403 ntBASIC1.01□□□□□ -2.25
CCDC54Q8NEL0 SNORA27.1-201ENST00000362604 124 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 SNORA7.1-201ENST00000363750 139 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 RNU6-1188P-201ENST00000363795 107 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 RNU6-961P-201ENST00000363893 105 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 RNU6-457P-201ENST00000363999 107 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 RNY3P11-201ENST00000364153 102 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 RNA5SP259-201ENST00000365541 109 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 RNU6-1264P-201ENST00000383891 107 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 SNORA22-201ENST00000383907 134 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 SNORA22C-201ENST00000384614 134 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 RNU6-310P-201ENST00000384655 107 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1□□□□□ -2.25
CCDC54Q8NEL0 FGF7P8-201ENST00000402994 292 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 AC018865.2-201ENST00000423631 129 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 MTCYBP10-201ENST00000424905 650 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 AC092423.1-201ENST00000430165 186 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 DYNLT3P2-201ENST00000442517 295 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 PGBD4P5-201ENST00000445958 426 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 UQCRBP2-201ENST00000447827 297 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 RPS29P29-201ENST00000456396 171 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 AC091021.1-201ENST00000468051 388 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 RNU7-40P-201ENST00000516397 64 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 RN7SKP49-201ENST00000516675 260 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 AC022868.1-201ENST00000517767 391 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 RAB11AP2-201ENST00000545905 639 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 7SK.7-201ENST00000603504 247 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 AL021879.1-201ENST00000611756 288 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 AC040896.1-201ENST00000613819 479 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 AC092794.2-201ENST00000620933 563 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 MIR6079-201ENST00000635807 62 ntBASIC1□□□□□ -2.25
CCDC54Q8NEL0 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 MIRLET7C-201ENST00000362160 84 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 SNORD33-201ENST00000362761 85 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 RNU6-879P-201ENST00000364328 108 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 Y_RNA.361-201ENST00000365515 120 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 SNORA70.7-201ENST00000384159 133 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 Y_RNA.595-201ENST00000410403 105 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 MRPS18CP6-201ENST00000423587 223 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 RAB28P5-201ENST00000427490 651 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 CALM2P4-201ENST00000430810 426 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 PCNPP5-201ENST00000452246 481 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 MTCO3P10-201ENST00000455912 772 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 RPL17P19-201ENST00000489069 552 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 OR9P1P-201ENST00000496431 281 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 SNORA40.9-201ENST00000515895 93 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 DNAJC19P9-201ENST00000555084 351 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 AC104260.1-201ENST00000616660 539 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 AC106754.2-201ENST00000623006 233 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 AC006435.5-201ENST00000624486 112 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 TPTEP1-208ENST00000636884 213 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 AC005592.1-201ENST00000566527 1640 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 AC073544.1-201ENST00000600110 1595 ntBASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
CCDC54Q8NEL0 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 SNORD41-201ENST00000386967 70 ntBASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 RNU6-700P-201ENST00000391043 107 ntBASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 U8.16-201ENST00000391279 133 ntBASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 RNU6-876P-201ENST00000391295 104 ntBASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 RNU6-370P-201ENST00000411008 104 ntBASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 RNU5A-5P-201ENST00000411054 116 ntBASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 AL591806.2-201ENST00000433122 173 ntBASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 AL137792.2-201ENST00000443484 235 ntBASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 CHEK2P4-201ENST00000450340 246 ntBASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 RNA5SP20-201ENST00000515976 84 ntBASIC0.98□□□□□ -2.25
CCDC54Q8NEL0 RNU6-63P-201ENST00000516690 95 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms