Protein–RNA interactions for Protein: Q8NAV1

PRPF38A, Pre-mRNA-splicing factor 38A, humanhuman

Known RBP Predictions only

Length 312 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38AQ8NAV1 MIR221-201ENST00000385135 110 ntBASIC2.6□□□□□ -1.99
PRPF38AQ8NAV1 AL512604.1-201ENST00000404812 257 ntBASIC2.6□□□□□ -1.99
PRPF38AQ8NAV1 MTND2P23-201ENST00000422990 651 ntBASIC2.6□□□□□ -1.99
PRPF38AQ8NAV1 AC024067.1-201ENST00000426199 223 ntBASIC2.6□□□□□ -1.99
PRPF38AQ8NAV1 AC099677.2-201ENST00000436385 175 ntBASIC2.6□□□□□ -1.99
PRPF38AQ8NAV1 AL118496.2-201ENST00000448300 230 ntBASIC2.6□□□□□ -1.99
PRPF38AQ8NAV1 AC136932.1-201ENST00000574771 208 ntBASIC2.6□□□□□ -1.99
PRPF38AQ8NAV1 SDR42E1P4-201ENST00000620894 481 ntBASIC2.6□□□□□ -1.99
PRPF38AQ8NAV1 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.6□□□□□ -1.99
PRPF38AQ8NAV1 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.6□□□□□ -1.99
PRPF38AQ8NAV1 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
PRPF38AQ8NAV1 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.59□□□□□ -1.99
PRPF38AQ8NAV1 RNU6-862P-201ENST00000362804 105 ntBASIC2.59□□□□□ -1.99
PRPF38AQ8NAV1 SNORD115-30-201ENST00000364117 82 ntBASIC2.59□□□□□ -1.99
PRPF38AQ8NAV1 SNORA6-201ENST00000384033 151 ntBASIC2.59□□□□□ -1.99
PRPF38AQ8NAV1 RNU6-417P-201ENST00000384712 107 ntBASIC2.59□□□□□ -1.99
PRPF38AQ8NAV1 RNU6-713P-201ENST00000384761 107 ntBASIC2.59□□□□□ -1.99
PRPF38AQ8NAV1 RPL21P1-201ENST00000399532 476 ntBASIC2.59□□□□□ -1.99
PRPF38AQ8NAV1 AL117342.1-201ENST00000404861 406 ntBASIC2.59□□□□□ -1.99
PRPF38AQ8NAV1 U3.40-201ENST00000408706 208 ntBASIC2.59□□□□□ -1.99
PRPF38AQ8NAV1 ELOCP20-201ENST00000422460 345 ntBASIC2.59□□□□□ -1.99
PRPF38AQ8NAV1 AC069257.2-201ENST00000441819 155 ntBASIC2.59□□□□□ -1.99
PRPF38AQ8NAV1 RPS27P22-201ENST00000478056 241 ntBASIC2.59□□□□□ -1.99
PRPF38AQ8NAV1 AC025465.3-201ENST00000510570 311 ntBASIC2.59□□□□□ -1.99
PRPF38AQ8NAV1 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.59□□□□□ -1.99
PRPF38AQ8NAV1 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.59□□□□□ -1.99
PRPF38AQ8NAV1 MIR6840-201ENST00000611937 71 ntBASIC2.59□□□□□ -1.99
PRPF38AQ8NAV1 AL359075.3-201ENST00000613288 217 ntBASIC2.59□□□□□ -1.99
PRPF38AQ8NAV1 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.59□□□□□ -2
PRPF38AQ8NAV1 SNORA27.1-201ENST00000362604 124 ntBASIC2.58□□□□□ -2
PRPF38AQ8NAV1 RNU6-324P-201ENST00000363957 106 ntBASIC2.58□□□□□ -2
PRPF38AQ8NAV1 Y_RNA.287-201ENST00000364853 94 ntBASIC2.58□□□□□ -2
PRPF38AQ8NAV1 RNA5SP323-201ENST00000391094 133 ntBASIC2.58□□□□□ -2
PRPF38AQ8NAV1 AL355796.1-201ENST00000406706 323 ntBASIC2.58□□□□□ -2
PRPF38AQ8NAV1 RNU2-20P-201ENST00000410425 191 ntBASIC2.58□□□□□ -2
PRPF38AQ8NAV1 AL158823.1-201ENST00000418441 478 ntBASIC2.58□□□□□ -2
PRPF38AQ8NAV1 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.58□□□□□ -2
PRPF38AQ8NAV1 MRPS10P1-201ENST00000448483 130 ntBASIC2.58□□□□□ -2
PRPF38AQ8NAV1 RPL23AP3-201ENST00000453844 468 ntBASIC2.58□□□□□ -2
PRPF38AQ8NAV1 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.58□□□□□ -2
PRPF38AQ8NAV1 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.58□□□□□ -2
PRPF38AQ8NAV1 MIR5094-201ENST00000578766 85 ntBASIC2.58□□□□□ -2
PRPF38AQ8NAV1 MIR4438-201ENST00000585271 93 ntBASIC2.58□□□□□ -2
PRPF38AQ8NAV1 MIR7843-201ENST00000622274 79 ntBASIC2.58□□□□□ -2
PRPF38AQ8NAV1 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
PRPF38AQ8NAV1 ZNF720P1-201ENST00000562403 1939 ntBASIC2.58□□□□□ -2
PRPF38AQ8NAV1 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.57□□□□□ -2
PRPF38AQ8NAV1 RNU4-90P-201ENST00000362773 141 ntBASIC2.57□□□□□ -2
PRPF38AQ8NAV1 SNORD113-8-201ENST00000363497 74 ntBASIC2.57□□□□□ -2
PRPF38AQ8NAV1 Y_RNA.176-201ENST00000363815 109 ntBASIC2.57□□□□□ -2
PRPF38AQ8NAV1 RNU6-1109P-201ENST00000391187 107 ntBASIC2.57□□□□□ -2
PRPF38AQ8NAV1 AL031003.1-201ENST00000404229 172 ntBASIC2.57□□□□□ -2
PRPF38AQ8NAV1 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.57□□□□□ -2
PRPF38AQ8NAV1 LINC01399-202ENST00000458450 244 ntBASIC2.57□□□□□ -2
PRPF38AQ8NAV1 AC079804.2-201ENST00000490376 200 ntBASIC2.57□□□□□ -2
PRPF38AQ8NAV1 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC2.57□□□□□ -2
PRPF38AQ8NAV1 RNA5SP200-201ENST00000516360 103 ntBASIC2.57□□□□□ -2
PRPF38AQ8NAV1 RNU6-635P-201ENST00000516651 102 ntBASIC2.57□□□□□ -2
PRPF38AQ8NAV1 RNU1-142P-201ENST00000516682 145 ntBASIC2.57□□□□□ -2
PRPF38AQ8NAV1 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.57□□□□□ -2
PRPF38AQ8NAV1 AL117187.1-201ENST00000555482 181 ntBASIC2.57□□□□□ -2
PRPF38AQ8NAV1 U6.73-201ENST00000619194 103 ntBASIC2.57□□□□□ -2
PRPF38AQ8NAV1 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.57□□□□□ -2
PRPF38AQ8NAV1 U6.104-201ENST00000637979 90 ntBASIC2.57□□□□□ -2
PRPF38AQ8NAV1 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.57□□□□□ -2
PRPF38AQ8NAV1 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.56□□□□□ -2
PRPF38AQ8NAV1 SNORD114-1-201ENST00000362705 72 ntBASIC2.56□□□□□ -2
PRPF38AQ8NAV1 RNU6-1019P-201ENST00000364424 107 ntBASIC2.56□□□□□ -2
PRPF38AQ8NAV1 RNU6-407P-201ENST00000365280 104 ntBASIC2.56□□□□□ -2
PRPF38AQ8NAV1 Y_RNA.361-201ENST00000365515 120 ntBASIC2.56□□□□□ -2
PRPF38AQ8NAV1 RNU6-710P-201ENST00000410424 105 ntBASIC2.56□□□□□ -2
PRPF38AQ8NAV1 RNU6-1199P-201ENST00000411249 104 ntBASIC2.56□□□□□ -2
PRPF38AQ8NAV1 RNA5SP20-201ENST00000515976 84 ntBASIC2.56□□□□□ -2
PRPF38AQ8NAV1 AC027419.1-201ENST00000522976 328 ntBASIC2.56□□□□□ -2
PRPF38AQ8NAV1 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.56□□□□□ -2
PRPF38AQ8NAV1 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.56□□□□□ -2
PRPF38AQ8NAV1 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.56□□□□□ -2
PRPF38AQ8NAV1 MIR5694-201ENST00000581190 76 ntBASIC2.56□□□□□ -2
PRPF38AQ8NAV1 AC009831.4-201ENST00000620744 325 ntBASIC2.56□□□□□ -2
PRPF38AQ8NAV1 MIR219B-201ENST00000637023 88 ntBASIC2.56□□□□□ -2
PRPF38AQ8NAV1 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.56□□□□□ -2
PRPF38AQ8NAV1 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
PRPF38AQ8NAV1 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.56□□□□□ -2
PRPF38AQ8NAV1 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.55□□□□□ -2
PRPF38AQ8NAV1 SNORA8-201ENST00000384574 139 ntBASIC2.55□□□□□ -2
PRPF38AQ8NAV1 SNORA64-201ENST00000384674 134 ntBASIC2.55□□□□□ -2
PRPF38AQ8NAV1 RNU6-1248P-201ENST00000391096 64 ntBASIC2.55□□□□□ -2
PRPF38AQ8NAV1 RNU4-30P-201ENST00000410245 143 ntBASIC2.55□□□□□ -2
PRPF38AQ8NAV1 AL356379.1-201ENST00000414105 126 ntBASIC2.55□□□□□ -2
PRPF38AQ8NAV1 POLR2KP2-201ENST00000438155 177 ntBASIC2.55□□□□□ -2
PRPF38AQ8NAV1 RPL23AP7-203ENST00000449021 469 ntBASIC2.55□□□□□ -2
PRPF38AQ8NAV1 MTND4LP30-201ENST00000454092 297 ntBASIC2.55□□□□□ -2
PRPF38AQ8NAV1 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.55□□□□□ -2
PRPF38AQ8NAV1 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.55□□□□□ -2
PRPF38AQ8NAV1 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC2.55□□□□□ -2
PRPF38AQ8NAV1 AP003733.2-201ENST00000529409 171 ntBASIC2.55□□□□□ -2
PRPF38AQ8NAV1 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.55□□□□□ -2
PRPF38AQ8NAV1 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.55□□□□□ -2
PRPF38AQ8NAV1 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.55□□□□□ -2
PRPF38AQ8NAV1 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 162.8 ms