Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 SNORA51.4-201ENST00000364993 124 ntBASIC3.28□□□□□ -1.88
USHBP1Q8N6Y0 MIR569-201ENST00000385228 96 ntBASIC3.28□□□□□ -1.88
USHBP1Q8N6Y0 MIR616-201ENST00000385293 97 ntBASIC3.28□□□□□ -1.88
USHBP1Q8N6Y0 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.28□□□□□ -1.88
USHBP1Q8N6Y0 MIR1185-2-201ENST00000408687 86 ntBASIC3.28□□□□□ -1.88
USHBP1Q8N6Y0 RNU6-257P-201ENST00000410238 98 ntBASIC3.28□□□□□ -1.88
USHBP1Q8N6Y0 EIF4EP4-201ENST00000424916 578 ntBASIC3.28□□□□□ -1.88
USHBP1Q8N6Y0 Z98742.2-201ENST00000431564 187 ntBASIC3.28□□□□□ -1.88
USHBP1Q8N6Y0 RNU7-141P-201ENST00000459304 62 ntBASIC3.28□□□□□ -1.88
USHBP1Q8N6Y0 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.28□□□□□ -1.88
USHBP1Q8N6Y0 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.28□□□□□ -1.88
USHBP1Q8N6Y0 AC090616.3-201ENST00000582184 217 ntBASIC3.28□□□□□ -1.88
USHBP1Q8N6Y0 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.28□□□□□ -1.88
USHBP1Q8N6Y0 AC099778.2-201ENST00000610904 211 ntBASIC3.28□□□□□ -1.88
USHBP1Q8N6Y0 AC108206.1-201ENST00000570186 4159 ntBASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 RNU6-969P-201ENST00000383900 105 ntBASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 Y_RNA.572-201ENST00000384757 98 ntBASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 AL359511.1-201ENST00000402970 211 ntBASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 AL590004.2-201ENST00000404787 371 ntBASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 SCARNA8-201ENST00000515924 131 ntBASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 RNU5F-4P-201ENST00000516581 114 ntBASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 AC109810.1-201ENST00000534066 224 ntBASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 DNAJC19P2-201ENST00000593340 302 ntBASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 RPL30P11-203ENST00000598995 310 ntBASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 AC025754.2-201ENST00000606491 432 ntBASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 AC110079.1-202ENST00000635213 138 ntBASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.27□□□□□ -1.89
USHBP1Q8N6Y0 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
USHBP1Q8N6Y0 AC100821.1-201ENST00000523153 2479 ntBASIC3.26□□□□□ -1.89
USHBP1Q8N6Y0 Y_RNA.337-201ENST00000365312 102 ntBASIC3.26□□□□□ -1.89
USHBP1Q8N6Y0 DYNLT3P1-201ENST00000378574 347 ntBASIC3.26□□□□□ -1.89
USHBP1Q8N6Y0 MIR29B2-201ENST00000385055 81 ntBASIC3.26□□□□□ -1.89
USHBP1Q8N6Y0 RNU6-1168P-201ENST00000390831 104 ntBASIC3.26□□□□□ -1.89
USHBP1Q8N6Y0 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC3.26□□□□□ -1.89
USHBP1Q8N6Y0 RNU6-1098P-201ENST00000516772 96 ntBASIC3.26□□□□□ -1.89
USHBP1Q8N6Y0 RNU6-453P-201ENST00000516819 85 ntBASIC3.26□□□□□ -1.89
USHBP1Q8N6Y0 AC002064.3-201ENST00000623448 346 ntBASIC3.26□□□□□ -1.89
USHBP1Q8N6Y0 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.26□□□□□ -1.89
USHBP1Q8N6Y0 AC010332.2-201ENST00000613083 1904 ntBASIC3.26□□□□□ -1.89
USHBP1Q8N6Y0 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
USHBP1Q8N6Y0 AC103988.1-201ENST00000566382 2177 ntBASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 AC008264.2-201ENST00000610193 3731 ntBASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 FAM35CP-201ENST00000554755 2470 ntBASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 SNORA22C-201ENST00000384614 134 ntBASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 SNORA40-201ENST00000388090 126 ntBASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 MIR767-201ENST00000390228 109 ntBASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 RNA5SP354-201ENST00000391247 136 ntBASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 MIR513C-201ENST00000401352 84 ntBASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 RPL30P13-201ENST00000418873 348 ntBASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 AC074290.1-201ENST00000448883 135 ntBASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 snoU13.15-201ENST00000459407 104 ntBASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 RPS27P26-201ENST00000494583 239 ntBASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 RNA5SP272-201ENST00000516095 111 ntBASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 RNA5SP281-201ENST00000516504 135 ntBASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 RNU6-1007P-201ENST00000516586 107 ntBASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 AL391903.3-201ENST00000612158 163 ntBASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 AL365222.1-201ENST00000614661 98 ntBASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 AGL-204ENST00000370161 6923 ntTSL 5 BASIC3.25□□□□□ -1.89
USHBP1Q8N6Y0 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.24□□□□□ -1.89
USHBP1Q8N6Y0 RNU6-1228P-201ENST00000391014 107 ntBASIC3.24□□□□□ -1.89
USHBP1Q8N6Y0 MIR300-201ENST00000401138 83 ntBASIC3.24□□□□□ -1.89
USHBP1Q8N6Y0 AL513477.1-202ENST00000417061 214 ntBASIC3.24□□□□□ -1.89
USHBP1Q8N6Y0 AC009414.1-201ENST00000427200 443 ntBASIC3.24□□□□□ -1.89
USHBP1Q8N6Y0 HMGN2P9-201ENST00000476875 229 ntBASIC3.24□□□□□ -1.89
USHBP1Q8N6Y0 RAC1P5-201ENST00000512182 576 ntBASIC3.24□□□□□ -1.89
USHBP1Q8N6Y0 RNA5SP385-201ENST00000515947 110 ntBASIC3.24□□□□□ -1.89
USHBP1Q8N6Y0 MIR4724-201ENST00000579485 89 ntBASIC3.24□□□□□ -1.89
USHBP1Q8N6Y0 MIR4765-201ENST00000585007 77 ntBASIC3.24□□□□□ -1.89
USHBP1Q8N6Y0 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.24□□□□□ -1.89
USHBP1Q8N6Y0 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
USHBP1Q8N6Y0 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
USHBP1Q8N6Y0 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
USHBP1Q8N6Y0 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
USHBP1Q8N6Y0 U8.7-201ENST00000364940 136 ntBASIC3.23□□□□□ -1.89
USHBP1Q8N6Y0 RNU4-11P-201ENST00000365287 132 ntBASIC3.23□□□□□ -1.89
USHBP1Q8N6Y0 RNU6-735P-201ENST00000410612 107 ntBASIC3.23□□□□□ -1.89
USHBP1Q8N6Y0 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.23□□□□□ -1.89
USHBP1Q8N6Y0 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC3.23□□□□□ -1.89
USHBP1Q8N6Y0 HSPE1P21-201ENST00000438283 308 ntBASIC3.23□□□□□ -1.89
USHBP1Q8N6Y0 AL121914.1-201ENST00000450188 156 ntBASIC3.23□□□□□ -1.89
USHBP1Q8N6Y0 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.23□□□□□ -1.89
USHBP1Q8N6Y0 AC245047.8-201ENST00000456455 284 ntBASIC3.23□□□□□ -1.89
USHBP1Q8N6Y0 AC103810.1-201ENST00000579873 453 ntBASIC3.23□□□□□ -1.89
USHBP1Q8N6Y0 AC103810.6-201ENST00000606708 136 ntBASIC3.23□□□□□ -1.89
USHBP1Q8N6Y0 AC107294.3-201ENST00000609211 526 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms