Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 MIR624-201ENST00000385217 97 ntBASIC3.1□□□□□ -1.91
UBE3DQ7Z6J8 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
UBE3DQ7Z6J8 MIR1253-201ENST00000408273 105 ntBASIC3.1□□□□□ -1.91
UBE3DQ7Z6J8 CYCTP-201ENST00000504253 315 ntBASIC3.1□□□□□ -1.91
UBE3DQ7Z6J8 AC104027.1-201ENST00000521887 300 ntBASIC3.1□□□□□ -1.91
UBE3DQ7Z6J8 MIR3199-1-201ENST00000582434 88 ntBASIC3.1□□□□□ -1.91
UBE3DQ7Z6J8 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.1□□□□□ -1.91
UBE3DQ7Z6J8 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.1□□□□□ -1.91
UBE3DQ7Z6J8 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
UBE3DQ7Z6J8 MIR7515-201ENST00000637837 67 ntBASIC3.1□□□□□ -1.91
UBE3DQ7Z6J8 AC091152.2-201ENST00000591628 2569 ntBASIC3.09□□□□□ -1.91
UBE3DQ7Z6J8 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
UBE3DQ7Z6J8 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
UBE3DQ7Z6J8 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.09□□□□□ -1.91
UBE3DQ7Z6J8 RNU6-429P-201ENST00000384582 108 ntBASIC3.09□□□□□ -1.91
UBE3DQ7Z6J8 RNU6-1328P-201ENST00000410938 106 ntBASIC3.09□□□□□ -1.91
UBE3DQ7Z6J8 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.09□□□□□ -1.91
UBE3DQ7Z6J8 CST9LP2-201ENST00000437612 320 ntBASIC3.09□□□□□ -1.91
UBE3DQ7Z6J8 AC092185.1-201ENST00000491371 97 ntBASIC3.09□□□□□ -1.91
UBE3DQ7Z6J8 RNU6-589P-201ENST00000516485 107 ntBASIC3.09□□□□□ -1.91
UBE3DQ7Z6J8 RNU6-965P-201ENST00000516721 96 ntBASIC3.09□□□□□ -1.91
UBE3DQ7Z6J8 RNU7-149P-201ENST00000516739 59 ntBASIC3.09□□□□□ -1.91
UBE3DQ7Z6J8 MIR2682-201ENST00000580305 110 ntBASIC3.09□□□□□ -1.91
UBE3DQ7Z6J8 MIR3117-201ENST00000584034 78 ntBASIC3.09□□□□□ -1.91
UBE3DQ7Z6J8 AC019176.2-201ENST00000611579 315 ntBASIC3.09□□□□□ -1.91
UBE3DQ7Z6J8 U2.20-201ENST00000613956 192 ntBASIC3.09□□□□□ -1.91
UBE3DQ7Z6J8 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
UBE3DQ7Z6J8 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 RNU6-235P-201ENST00000362644 107 ntBASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 Y_RNA.91-201ENST00000363042 107 ntBASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 RNU1-96P-201ENST00000364163 162 ntBASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 RNU2-63P-201ENST00000410792 194 ntBASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 RNA5SP127-201ENST00000411051 133 ntBASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 RPS27P29-201ENST00000463110 252 ntBASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 RN7SL442P-201ENST00000473804 320 ntBASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 CKS1BP2-201ENST00000497342 240 ntBASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 RNU1-143P-201ENST00000516296 146 ntBASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 U1.23-201ENST00000610293 146 ntBASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 RNU1-68P-201ENST00000615382 146 ntBASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 MIR6129-201ENST00000616087 109 ntBASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 Pinc.1-201ENST00000616452 154 ntBASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 U1.39-201ENST00000621562 146 ntBASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 AC073476.4-201ENST00000628409 72 ntBASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 AC103988.1-201ENST00000566382 2177 ntBASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.08□□□□□ -1.92
UBE3DQ7Z6J8 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 Y_RNA.114-201ENST00000363265 113 ntBASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 RNVU1-14-201ENST00000384770 164 ntBASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 AL031121.1-201ENST00000406553 254 ntBASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 AC005326.1-201ENST00000429197 123 ntBASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 MTATP6P21-201ENST00000440681 189 ntBASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 AC115115.1-201ENST00000449927 248 ntBASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 RNU6-1096P-201ENST00000517089 102 ntBASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 RNU6-365P-201ENST00000517113 106 ntBASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 RNU1-104P-201ENST00000517280 175 ntBASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 AL358944.1-201ENST00000528537 144 ntBASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 PRELID2P1-201ENST00000552837 301 ntBASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 AC091178.2-201ENST00000584401 117 ntBASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 AL670379.3-201ENST00000605040 251 ntBASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
UBE3DQ7Z6J8 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
UBE3DQ7Z6J8 RNA5SP267-201ENST00000364893 126 ntBASIC3.06□□□□□ -1.92
UBE3DQ7Z6J8 Y_RNA.294-201ENST00000364916 102 ntBASIC3.06□□□□□ -1.92
UBE3DQ7Z6J8 MIR218-1-201ENST00000384999 110 ntBASIC3.06□□□□□ -1.92
UBE3DQ7Z6J8 SNORA40.5-201ENST00000391061 128 ntBASIC3.06□□□□□ -1.92
UBE3DQ7Z6J8 RNU1-101P-201ENST00000391171 127 ntBASIC3.06□□□□□ -1.92
UBE3DQ7Z6J8 Y_RNA.617-201ENST00000410920 90 ntBASIC3.06□□□□□ -1.92
UBE3DQ7Z6J8 MLLT10P1-201ENST00000418346 262 ntBASIC3.06□□□□□ -1.92
UBE3DQ7Z6J8 RPS15AP28-201ENST00000435088 386 ntBASIC3.06□□□□□ -1.92
UBE3DQ7Z6J8 SNORA18.4-201ENST00000516440 124 ntBASIC3.06□□□□□ -1.92
UBE3DQ7Z6J8 Y_RNA.690-201ENST00000516603 95 ntBASIC3.06□□□□□ -1.92
UBE3DQ7Z6J8 AC133485.4-201ENST00000561835 220 ntBASIC3.06□□□□□ -1.92
UBE3DQ7Z6J8 MTND5P34-201ENST00000568888 325 ntBASIC3.06□□□□□ -1.92
UBE3DQ7Z6J8 AC138907.4-201ENST00000570107 226 ntBASIC3.06□□□□□ -1.92
UBE3DQ7Z6J8 AC087685.1-201ENST00000587507 141 ntBASIC3.06□□□□□ -1.92
UBE3DQ7Z6J8 AC007229.1-201ENST00000590455 412 ntBASIC3.06□□□□□ -1.92
UBE3DQ7Z6J8 AC012314.7-201ENST00000619693 93 ntBASIC3.06□□□□□ -1.92
UBE3DQ7Z6J8 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
UBE3DQ7Z6J8 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
UBE3DQ7Z6J8 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.06□□□□□ -1.92
UBE3DQ7Z6J8 RNU6-805P-201ENST00000365643 106 ntBASIC3.05□□□□□ -1.92
UBE3DQ7Z6J8 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
UBE3DQ7Z6J8 CD24P4-201ENST00000382840 243 ntBASIC3.05□□□□□ -1.92
UBE3DQ7Z6J8 RNU6-1336P-201ENST00000383886 109 ntBASIC3.05□□□□□ -1.92
UBE3DQ7Z6J8 Y_RNA.525-201ENST00000384570 113 ntBASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 210.9 ms