Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 RN7SKP49-201ENST00000516675 260 ntBASIC1.38□□□□□ -2.19
SHHQ15465 AC027288.2-201ENST00000553028 243 ntBASIC1.38□□□□□ -2.19
SHHQ15465 AC004584.2-201ENST00000570407 410 ntBASIC1.38□□□□□ -2.19
SHHQ15465 AC006600.1-201ENST00000572529 153 ntBASIC1.38□□□□□ -2.19
SHHQ15465 AC125232.2-201ENST00000592457 143 ntBASIC1.38□□□□□ -2.19
SHHQ15465 Z98751.3-201ENST00000604447 521 ntBASIC1.38□□□□□ -2.19
SHHQ15465 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.38□□□□□ -2.19
SHHQ15465 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.38□□□□□ -2.19
SHHQ15465 SNORD98-201ENST00000636377 67 ntBASIC1.38□□□□□ -2.19
SHHQ15465 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
SHHQ15465 RNU1-58P-201ENST00000362413 163 ntBASIC1.37□□□□□ -2.19
SHHQ15465 RNU6-490P-201ENST00000362985 107 ntBASIC1.37□□□□□ -2.19
SHHQ15465 RNU6-727P-201ENST00000363592 107 ntBASIC1.37□□□□□ -2.19
SHHQ15465 RNU6-1286P-201ENST00000383871 107 ntBASIC1.37□□□□□ -2.19
SHHQ15465 RNU6-1160P-201ENST00000384546 104 ntBASIC1.37□□□□□ -2.19
SHHQ15465 RNU6-823P-201ENST00000391042 103 ntBASIC1.37□□□□□ -2.19
SHHQ15465 AL590004.1-201ENST00000405321 300 ntBASIC1.37□□□□□ -2.19
SHHQ15465 RNU6-121P-201ENST00000410525 99 ntBASIC1.37□□□□□ -2.19
SHHQ15465 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.37□□□□□ -2.19
SHHQ15465 HSPE1P21-201ENST00000438283 308 ntBASIC1.37□□□□□ -2.19
SHHQ15465 SNORD116.3-201ENST00000517176 78 ntBASIC1.37□□□□□ -2.19
SHHQ15465 AC115990.1-201ENST00000526957 301 ntBASIC1.37□□□□□ -2.19
SHHQ15465 AK6P2-201ENST00000549020 471 ntBASIC1.37□□□□□ -2.19
SHHQ15465 VN1R107P-201ENST00000601784 209 ntBASIC1.37□□□□□ -2.19
SHHQ15465 AC090517.3-201ENST00000625170 141 ntBASIC1.37□□□□□ -2.19
SHHQ15465 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.37□□□□□ -2.19
SHHQ15465 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.37□□□□□ -2.19
SHHQ15465 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
SHHQ15465 Y_RNA.99-201ENST00000363138 105 ntBASIC1.36□□□□□ -2.19
SHHQ15465 RNU6-1309P-201ENST00000363305 108 ntBASIC1.36□□□□□ -2.19
SHHQ15465 Y_RNA.178-201ENST00000363832 102 ntBASIC1.36□□□□□ -2.19
SHHQ15465 RNU6-505P-201ENST00000384427 107 ntBASIC1.36□□□□□ -2.19
SHHQ15465 MIR10B-201ENST00000385011 110 ntBASIC1.36□□□□□ -2.19
SHHQ15465 RNU6-1106P-201ENST00000390845 107 ntBASIC1.36□□□□□ -2.19
SHHQ15465 snosnR66.1-201ENST00000391095 99 ntBASIC1.36□□□□□ -2.19
SHHQ15465 BTF3L4P2-201ENST00000392798 346 ntBASIC1.36□□□□□ -2.19
SHHQ15465 MIR190B-201ENST00000401119 79 ntBASIC1.36□□□□□ -2.19
SHHQ15465 Y_RNA.592-201ENST00000410274 109 ntBASIC1.36□□□□□ -2.19
SHHQ15465 RNU6-1001P-201ENST00000411265 100 ntBASIC1.36□□□□□ -2.19
SHHQ15465 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.36□□□□□ -2.19
SHHQ15465 ELOCP20-201ENST00000422460 345 ntBASIC1.36□□□□□ -2.19
SHHQ15465 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.36□□□□□ -2.19
SHHQ15465 AC244670.1-201ENST00000436879 112 ntBASIC1.36□□□□□ -2.19
SHHQ15465 AC145146.1-201ENST00000496370 254 ntBASIC1.36□□□□□ -2.19
SHHQ15465 AC114801.2-201ENST00000503825 781 ntBASIC1.36□□□□□ -2.19
SHHQ15465 RNU6-976P-201ENST00000516086 111 ntBASIC1.36□□□□□ -2.19
SHHQ15465 RNU6-113P-201ENST00000516653 101 ntBASIC1.36□□□□□ -2.19
SHHQ15465 RNU6-965P-201ENST00000516721 96 ntBASIC1.36□□□□□ -2.19
SHHQ15465 SNORA44.1-201ENST00000517031 108 ntBASIC1.36□□□□□ -2.19
SHHQ15465 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.36□□□□□ -2.19
SHHQ15465 AL590705.4-201ENST00000532209 134 ntBASIC1.36□□□□□ -2.19
SHHQ15465 AP002001.1-203ENST00000534002 267 ntBASIC1.36□□□□□ -2.19
SHHQ15465 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.36□□□□□ -2.19
SHHQ15465 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.36□□□□□ -2.19
SHHQ15465 AC090517.1-201ENST00000569307 266 ntBASIC1.36□□□□□ -2.19
SHHQ15465 AC113195.1-201ENST00000579952 141 ntBASIC1.36□□□□□ -2.19
SHHQ15465 CYP2C61P-201ENST00000604072 290 ntBASIC1.36□□□□□ -2.19
SHHQ15465 AC010900.2-201ENST00000604508 210 ntBASIC1.36□□□□□ -2.19
SHHQ15465 RAC1P9-201ENST00000604990 392 ntBASIC1.36□□□□□ -2.19
SHHQ15465 AL606534.2-204ENST00000635008 178 ntBASIC1.36□□□□□ -2.19
SHHQ15465 Y_RNA.64-201ENST00000362845 102 ntBASIC1.35□□□□□ -2.19
SHHQ15465 SNORD115-3-201ENST00000363100 82 ntBASIC1.35□□□□□ -2.19
SHHQ15465 Y_RNA.202-201ENST00000364083 110 ntBASIC1.35□□□□□ -2.19
SHHQ15465 RNU4-41P-201ENST00000364426 143 ntBASIC1.35□□□□□ -2.19
SHHQ15465 RNU6-1164P-201ENST00000364428 107 ntBASIC1.35□□□□□ -2.19
SHHQ15465 RNU6-1141P-201ENST00000364520 107 ntBASIC1.35□□□□□ -2.19
SHHQ15465 SNORD87-201ENST00000364849 89 ntBASIC1.35□□□□□ -2.19
SHHQ15465 Y_RNA.428-201ENST00000384078 102 ntBASIC1.35□□□□□ -2.19
SHHQ15465 Y_RNA.459-201ENST00000384251 102 ntBASIC1.35□□□□□ -2.19
SHHQ15465 Y_RNA.577-201ENST00000384794 101 ntBASIC1.35□□□□□ -2.19
SHHQ15465 MIR215-201ENST00000384858 110 ntBASIC1.35□□□□□ -2.19
SHHQ15465 MIR320A-201ENST00000385302 82 ntBASIC1.35□□□□□ -2.19
SHHQ15465 SNORA26.3-201ENST00000391119 136 ntBASIC1.35□□□□□ -2.19
SHHQ15465 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.35□□□□□ -2.19
SHHQ15465 AL357134.1-201ENST00000445848 426 ntBASIC1.35□□□□□ -2.19
SHHQ15465 snoU13.30-201ENST00000458951 104 ntBASIC1.35□□□□□ -2.19
SHHQ15465 AC022868.1-201ENST00000517767 391 ntBASIC1.35□□□□□ -2.19
SHHQ15465 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
SHHQ15465 RRN3P3-201ENST00000549207 578 ntBASIC1.35□□□□□ -2.19
SHHQ15465 MIR5000-201ENST00000577717 103 ntBASIC1.35□□□□□ -2.19
SHHQ15465 MIR5695-201ENST00000579717 85 ntBASIC1.35□□□□□ -2.19
SHHQ15465 MZT1P2-201ENST00000604387 248 ntBASIC1.35□□□□□ -2.19
SHHQ15465 AL356157.2-201ENST00000605122 111 ntBASIC1.35□□□□□ -2.19
SHHQ15465 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.35□□□□□ -2.19
SHHQ15465 SCARNA4-201ENST00000629045 128 ntBASIC1.35□□□□□ -2.19
SHHQ15465 U6.92-201ENST00000636464 89 ntBASIC1.35□□□□□ -2.19
SHHQ15465 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.35□□□□□ -2.19
SHHQ15465 ZNF204P-201ENST00000416749 2397 ntBASIC1.34□□□□□ -2.19
SHHQ15465 AC005592.1-201ENST00000566527 1640 ntBASIC1.34□□□□□ -2.19
SHHQ15465 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
SHHQ15465 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.34□□□□□ -2.19
SHHQ15465 RNU6-238P-201ENST00000363313 106 ntBASIC1.34□□□□□ -2.19
SHHQ15465 Y_RNA.133-201ENST00000363428 110 ntBASIC1.34□□□□□ -2.19
SHHQ15465 RNU6-873P-201ENST00000363833 107 ntBASIC1.34□□□□□ -2.19
SHHQ15465 RNU6-961P-201ENST00000363893 105 ntBASIC1.34□□□□□ -2.19
SHHQ15465 Y_RNA.210-201ENST00000364161 110 ntBASIC1.34□□□□□ -2.19
SHHQ15465 Y_RNA.214-201ENST00000364201 112 ntBASIC1.34□□□□□ -2.19
SHHQ15465 SNORA18.2-201ENST00000383865 132 ntBASIC1.34□□□□□ -2.19
SHHQ15465 RNU6-17P-201ENST00000384245 107 ntBASIC1.34□□□□□ -2.19
SHHQ15465 RNU6-102P-201ENST00000384485 104 ntBASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms