Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC091885.1-201ENST00000506658 268 ntBASIC-0.13□□□□□ -2.43
FOXA3P55318 RNA5SP20-201ENST00000515976 84 ntBASIC-0.13□□□□□ -2.43
FOXA3P55318 RNA5SP94-201ENST00000516917 108 ntBASIC-0.13□□□□□ -2.43
FOXA3P55318 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC-0.13□□□□□ -2.43
FOXA3P55318 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC-0.13□□□□□ -2.43
FOXA3P55318 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC-0.13□□□□□ -2.43
FOXA3P55318 SCOCP1-201ENST00000554676 349 ntBASIC-0.13□□□□□ -2.43
FOXA3P55318 AC112693.2-201ENST00000556538 232 ntBASIC-0.13□□□□□ -2.43
FOXA3P55318 MIR3682-201ENST00000581338 84 ntBASIC-0.13□□□□□ -2.43
FOXA3P55318 RBM11P1-201ENST00000604951 799 ntBASIC-0.13□□□□□ -2.43
FOXA3P55318 PVT1_3.1-201ENST00000620853 95 ntBASIC-0.13□□□□□ -2.43
FOXA3P55318 SRP54-214ENST00000630962 162 ntTSL 5 BASIC-0.13□□□□□ -2.43
FOXA3P55318 ANKRD20A17P-201ENST00000511745 1330 ntBASIC-0.13□□□□□ -2.43
FOXA3P55318 SNORD113-6-201ENST00000363345 75 ntBASIC-0.14□□□□□ -2.43
FOXA3P55318 RNU6-934P-201ENST00000365154 107 ntBASIC-0.14□□□□□ -2.43
FOXA3P55318 Y_RNA.393-201ENST00000383936 102 ntBASIC-0.14□□□□□ -2.43
FOXA3P55318 RNU6-784P-201ENST00000384330 106 ntBASIC-0.14□□□□□ -2.43
FOXA3P55318 SNORA75.6-201ENST00000391318 127 ntBASIC-0.14□□□□□ -2.43
FOXA3P55318 EIF4E2P1-201ENST00000393781 255 ntBASIC-0.14□□□□□ -2.43
FOXA3P55318 AL590002.1-201ENST00000406554 418 ntBASIC-0.14□□□□□ -2.43
FOXA3P55318 RNU6-613P-201ENST00000410412 108 ntBASIC-0.14□□□□□ -2.43
FOXA3P55318 RNU6-325P-201ENST00000411132 105 ntBASIC-0.14□□□□□ -2.43
FOXA3P55318 ATP6V0E1P1-201ENST00000412537 226 ntBASIC-0.14□□□□□ -2.43
FOXA3P55318 BX295541.1-201ENST00000417774 250 ntBASIC-0.14□□□□□ -2.43
FOXA3P55318 AC018865.2-201ENST00000423631 129 ntBASIC-0.14□□□□□ -2.43
FOXA3P55318 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC-0.14□□□□□ -2.43
FOXA3P55318 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC-0.14□□□□□ -2.43
FOXA3P55318 SNORA14.1-201ENST00000516113 141 ntBASIC-0.14□□□□□ -2.43
FOXA3P55318 RNU7-43P-201ENST00000516554 64 ntBASIC-0.14□□□□□ -2.43
FOXA3P55318 UBL5P4-201ENST00000562584 236 ntBASIC-0.14□□□□□ -2.43
FOXA3P55318 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC-0.14□□□□□ -2.43
FOXA3P55318 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC-0.14□□□□□ -2.43
FOXA3P55318 MIR5190-201ENST00000581537 80 ntBASIC-0.14□□□□□ -2.43
FOXA3P55318 RN7SL793P-201ENST00000583259 296 ntBASIC-0.14□□□□□ -2.43
FOXA3P55318 MIR4290-201ENST00000583807 95 ntBASIC-0.14□□□□□ -2.43
FOXA3P55318 AL022161.1-201ENST00000604390 213 ntBASIC-0.14□□□□□ -2.43
FOXA3P55318 MIR4251-201ENST00000635819 61 ntBASIC-0.14□□□□□ -2.43
FOXA3P55318 Y_RNA.168-201ENST00000363740 102 ntBASIC-0.15□□□□□ -2.43
FOXA3P55318 RNU6-1329P-201ENST00000365664 107 ntBASIC-0.15□□□□□ -2.43
FOXA3P55318 MIR513B-201ENST00000385136 84 ntBASIC-0.15□□□□□ -2.43
FOXA3P55318 RNU5A-5P-201ENST00000411054 116 ntBASIC-0.15□□□□□ -2.43
FOXA3P55318 RPL30P16-201ENST00000419341 429 ntBASIC-0.15□□□□□ -2.43
FOXA3P55318 MTCYBP8-201ENST00000422855 651 ntBASIC-0.15□□□□□ -2.43
FOXA3P55318 MTND4P32-201ENST00000437189 1237 ntBASIC-0.15□□□□□ -2.43
FOXA3P55318 SNORD123-201ENST00000459473 70 ntBASIC-0.15□□□□□ -2.43
FOXA3P55318 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC-0.15□□□□□ -2.43
FOXA3P55318 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC-0.15□□□□□ -2.43
FOXA3P55318 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC-0.15□□□□□ -2.43
FOXA3P55318 TUSC7.1-201ENST00000610969 165 ntBASIC-0.15□□□□□ -2.43
FOXA3P55318 MIR8076-201ENST00000611401 83 ntBASIC-0.15□□□□□ -2.43
FOXA3P55318 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC-0.15□□□□□ -2.43
FOXA3P55318 AC091925.1-201ENST00000623204 462 ntBASIC-0.15□□□□□ -2.43
FOXA3P55318 SNORD115-8-201ENST00000363856 82 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 SNORD115-38-201ENST00000365037 82 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 Y_RNA.319-201ENST00000365138 92 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 SNORA8.2-201ENST00000384372 139 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 RNY1P4-201ENST00000384595 115 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 RNU6-541P-201ENST00000384709 110 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC-0.16□□□□□ -2.44
FOXA3P55318 SNORA40.3-201ENST00000390964 122 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 RNU6-700P-201ENST00000391043 107 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 AL590632.1-201ENST00000424289 371 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 MTND1P4-201ENST00000435196 415 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC-0.16□□□□□ -2.44
FOXA3P55318 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC-0.16□□□□□ -2.44
FOXA3P55318 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC-0.16□□□□□ -2.44
FOXA3P55318 CCDC34P1-201ENST00000507441 517 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 MIR2115-201ENST00000516657 100 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 RNU6-1198P-201ENST00000516904 67 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC-0.16□□□□□ -2.44
FOXA3P55318 AP002963.1-201ENST00000530590 184 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 MTND1P8-201ENST00000571424 950 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 MIR4771-2-201ENST00000577758 74 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 MIR4804-201ENST00000581683 73 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 MIR4771-1-201ENST00000582617 74 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 AC008536.2-201ENST00000607284 349 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 AL391834.2-201ENST00000609982 546 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 HULC.1-201ENST00000612720 240 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 AL158209.2-201ENST00000619266 216 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 AC006504.8-201ENST00000621046 635 ntBASIC-0.16□□□□□ -2.44
FOXA3P55318 VPS35-212ENST00000640313 141 ntTSL 5 BASIC-0.16□□□□□ -2.44
FOXA3P55318 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC-0.17□□□□□ -2.44
FOXA3P55318 RNU6-181P-201ENST00000363225 107 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 Y_RNA.179-201ENST00000363844 90 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 Y_RNA.355-201ENST00000365462 98 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 MIR570-201ENST00000384917 97 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 RNU6-205P-201ENST00000390858 107 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 Y_RNA.621-201ENST00000411065 96 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC-0.17□□□□□ -2.44
FOXA3P55318 MTND1P26-201ENST00000440488 538 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 RNU7-56P-201ENST00000458744 62 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 RNU7-180P-201ENST00000459240 63 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 snoU13.18-201ENST00000459483 104 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 AC092436.3-201ENST00000511788 257 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC-0.17□□□□□ -2.44
FOXA3P55318 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 RNU6-1278P-201ENST00000516130 107 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 RNU6-63P-201ENST00000516690 95 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 RNU6-445P-201ENST00000516949 107 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 MTND4P7-201ENST00000523876 130 ntBASIC-0.17□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms