Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 Y_RNA.123-201ENST00000363338 102 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 RNU6-961P-201ENST00000363893 105 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 RNU6-105P-201ENST00000363909 104 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 RNY1P5-201ENST00000383890 115 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 Y_RNA.504-201ENST00000384481 104 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 RNU6-1117P-201ENST00000384525 104 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 RNU6-918P-201ENST00000391219 106 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 AL117339.3-201ENST00000418733 162 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 AC007560.1-201ENST00000426912 237 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC1.57□□□□□ -2.16
COL4A4P53420 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC1.57□□□□□ -2.16
COL4A4P53420 MRPL42P6-201ENST00000486397 371 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 AC139453.3-201ENST00000493276 369 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 RNU6-703P-201ENST00000516946 107 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 CASP1P1-201ENST00000526345 212 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC1.57□□□□□ -2.16
COL4A4P53420 FAM60BP-201ENST00000578364 658 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 SNORD84-203ENST00000584275 78 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 AC002545.1-201ENST00000592511 181 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 AL078605.1-201ENST00000603529 500 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 AL356157.2-201ENST00000605122 111 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 AC011921.3-201ENST00000605540 361 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 FTX_3.1-201ENST00000610451 147 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 AL590240.4-201ENST00000616908 390 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC1.57□□□□□ -2.16
COL4A4P53420 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
COL4A4P53420 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.57□□□□□ -2.16
COL4A4P53420 RNU6-858P-201ENST00000362436 107 ntBASIC1.56□□□□□ -2.16
COL4A4P53420 Y_RNA.291-201ENST00000364886 113 ntBASIC1.56□□□□□ -2.16
COL4A4P53420 SNORD50B-201ENST00000364995 70 ntBASIC1.56□□□□□ -2.16
COL4A4P53420 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.56□□□□□ -2.16
COL4A4P53420 RNA5SP492-201ENST00000411330 114 ntBASIC1.56□□□□□ -2.16
COL4A4P53420 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC1.56□□□□□ -2.16
COL4A4P53420 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC1.56□□□□□ -2.16
COL4A4P53420 AL078601.1-201ENST00000444542 271 ntBASIC1.56□□□□□ -2.16
COL4A4P53420 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.56□□□□□ -2.16
COL4A4P53420 RNU7-200P-201ENST00000516105 62 ntBASIC1.56□□□□□ -2.16
COL4A4P53420 SCARNA15.2-201ENST00000516409 127 ntBASIC1.56□□□□□ -2.16
COL4A4P53420 SNORA31.19-201ENST00000517079 126 ntBASIC1.56□□□□□ -2.16
COL4A4P53420 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.56□□□□□ -2.16
COL4A4P53420 AL031274.2-201ENST00000599419 203 ntBASIC1.56□□□□□ -2.16
COL4A4P53420 AL162424.1-201ENST00000602325 221 ntBASIC1.56□□□□□ -2.16
COL4A4P53420 AC011476.5-201ENST00000615594 130 ntBASIC1.56□□□□□ -2.16
COL4A4P53420 Y_RNA.383-201ENST00000383855 97 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 Y_RNA.398-201ENST00000383952 99 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 RNU1-52P-201ENST00000384190 164 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 RNU6-102P-201ENST00000384485 104 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
COL4A4P53420 RPS4XP3-201ENST00000398541 413 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 SNORD12B-201ENST00000410433 91 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 RNA5SP38-201ENST00000410750 119 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 AC074117.2-201ENST00000417130 397 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC1.55□□□□□ -2.16
COL4A4P53420 AC074133.1-201ENST00000515696 183 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 SNORA70.16-201ENST00000516390 95 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 Y_RNA.679-201ENST00000516416 91 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 Y_RNA.681-201ENST00000516445 113 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 RNA5SP54-201ENST00000516951 92 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 RNU2-31P-201ENST00000516954 155 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 RNU6-1073P-201ENST00000517182 106 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 MTND5P41-201ENST00000517498 206 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 AP002826.1-201ENST00000608835 315 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 AC108706.1-201ENST00000611053 297 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 SNORD115-32-201ENST00000364079 82 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 Y_RNA.233-201ENST00000364407 101 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 Y_RNA.275-201ENST00000364726 110 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 RNU4-9P-201ENST00000364951 139 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 RNU6-290P-201ENST00000365212 101 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 RNU6-234P-201ENST00000365229 104 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 SNORA29-201ENST00000384183 140 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 Y_RNA.497-201ENST00000384447 98 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 RNU6-1035P-201ENST00000384477 107 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 MIR10A-201ENST00000385043 110 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
COL4A4P53420 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
COL4A4P53420 MIR548J-201ENST00000408833 112 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 RNU4-30P-201ENST00000410245 143 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 AL512844.2-201ENST00000433990 593 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.55□□□□□ -2.16
COL4A4P53420 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.55□□□□□ -2.16
COL4A4P53420 MTATP6P7-201ENST00000453315 681 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 AP001324.2-201ENST00000461163 319 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 SEM1P1-201ENST00000506694 209 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 RNU6-346P-201ENST00000516288 111 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 RNU6-62P-201ENST00000516526 102 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 SNORD59.2-201ENST00000516873 68 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.55□□□□□ -2.16
COL4A4P53420 AC024405.2-202ENST00000532731 184 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC1.55□□□□□ -2.16
COL4A4P53420 UBL5P4-201ENST00000562584 236 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 MIR3660-201ENST00000584845 100 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 AC022441.3-201ENST00000605737 136 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 MIR6078-201ENST00000611069 100 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 U2.21-201ENST00000637295 81 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 AC002546.1-201ENST00000588041 2504 ntBASIC1.55□□□□□ -2.16
COL4A4P53420 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.54□□□□□ -2.16
COL4A4P53420 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC1.54□□□□□ -2.16
COL4A4P53420 RNU6-312P-201ENST00000364629 107 ntBASIC1.54□□□□□ -2.16
COL4A4P53420 RNU6-336P-201ENST00000364891 107 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms