Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 MIR513A1-201ENST00000385138 129 ntBASIC0.94□□□□□ -2.26
CXCL12P48061 RNU11-5P-201ENST00000391216 129 ntBASIC0.94□□□□□ -2.26
CXCL12P48061 MIR1277-201ENST00000408536 78 ntBASIC0.94□□□□□ -2.26
CXCL12P48061 RPL37P10-201ENST00000412884 288 ntBASIC0.94□□□□□ -2.26
CXCL12P48061 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.94□□□□□ -2.26
CXCL12P48061 AL139396.1-201ENST00000421137 167 ntBASIC0.94□□□□□ -2.26
CXCL12P48061 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.94□□□□□ -2.26
CXCL12P48061 USMG5P1-201ENST00000425964 177 ntBASIC0.94□□□□□ -2.26
CXCL12P48061 MTND4P18-201ENST00000447010 465 ntBASIC0.94□□□□□ -2.26
CXCL12P48061 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.94□□□□□ -2.26
CXCL12P48061 AC069439.1-201ENST00000494739 167 ntBASIC0.94□□□□□ -2.26
CXCL12P48061 RNU6-107P-201ENST00000516643 102 ntBASIC0.94□□□□□ -2.26
CXCL12P48061 Y_RNA.706-201ENST00000516933 99 ntBASIC0.94□□□□□ -2.26
CXCL12P48061 AC027419.1-201ENST00000522976 328 ntBASIC0.94□□□□□ -2.26
CXCL12P48061 AC019288.1-201ENST00000557918 224 ntBASIC0.94□□□□□ -2.26
CXCL12P48061 AC005668.1-201ENST00000571142 476 ntBASIC0.94□□□□□ -2.26
CXCL12P48061 AC021506.2-201ENST00000612354 169 ntBASIC0.94□□□□□ -2.26
CXCL12P48061 AC007014.2-201ENST00000615581 479 ntBASIC0.94□□□□□ -2.26
CXCL12P48061 AC002553.4-201ENST00000616896 331 ntBASIC0.94□□□□□ -2.26
CXCL12P48061 U6.73-201ENST00000619194 103 ntBASIC0.94□□□□□ -2.26
CXCL12P48061 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.94□□□□□ -2.26
CXCL12P48061 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.94□□□□□ -2.26
CXCL12P48061 Y_RNA.6-201ENST00000362350 114 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 SNORD33-201ENST00000362761 85 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 RNU6-1266P-201ENST00000362794 105 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 Y_RNA.184-201ENST00000363884 108 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 RNU4-41P-201ENST00000364426 143 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 RNA5SP259-201ENST00000365541 109 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 RNU6-1031P-201ENST00000384773 107 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 MIR625-201ENST00000385047 85 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 MIR548F5-201ENST00000408421 86 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 EIF1P1-201ENST00000421436 341 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 MRPL35P3-201ENST00000421557 364 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 USP9YP16-201ENST00000430287 407 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 USP9YP23-201ENST00000455085 407 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 AC026782.1-201ENST00000512952 449 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 RNU6-1114P-201ENST00000516022 107 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.93□□□□□ -2.26
CXCL12P48061 AC022432.1-201ENST00000595739 310 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 AC018462.2-201ENST00000605375 395 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 AC100812.1-201ENST00000607622 580 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 AC005014.2-201ENST00000607795 599 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 AC040896.1-201ENST00000613819 479 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 MIR8054-201ENST00000620877 86 ntBASIC0.93□□□□□ -2.26
CXCL12P48061 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.93□□□□□ -2.26
CXCL12P48061 MTND5P16-201ENST00000460269 1703 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
CXCL12P48061 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.92□□□□□ -2.26
CXCL12P48061 RNU5F-3P-201ENST00000363767 117 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 Y_RNA.374-201ENST00000365606 101 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 Y_RNA.490-201ENST00000384413 102 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 SNORA12.1-201ENST00000390873 148 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 Y_RNA.594-201ENST00000410373 140 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 RNU6-1001P-201ENST00000411265 100 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 AC245047.3-201ENST00000429428 127 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 TOMM22P2-201ENST00000430735 237 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.92□□□□□ -2.26
CXCL12P48061 RPS29P28-201ENST00000446439 141 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.92□□□□□ -2.26
CXCL12P48061 SNORD65B-201ENST00000459126 73 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 Y_RNA.683-201ENST00000516508 93 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 SUMO2P16-201ENST00000519475 264 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 AC023157.2-201ENST00000540596 141 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 AC093023.1-201ENST00000547375 507 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 CYP3A52P-201ENST00000563326 91 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 MIR4698-201ENST00000577795 80 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 MIR5701-3-201ENST00000578890 82 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 MIR5701-1-201ENST00000585138 82 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 AL390123.1-201ENST00000603216 237 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 MIR5701-2-201ENST00000615634 82 ntBASIC0.92□□□□□ -2.26
CXCL12P48061 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
CXCL12P48061 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
CXCL12P48061 Y_RNA.2-201ENST00000362330 96 ntBASIC0.91□□□□□ -2.26
CXCL12P48061 RNU6-874P-201ENST00000362390 105 ntBASIC0.91□□□□□ -2.26
CXCL12P48061 RNU6-1065P-201ENST00000384513 106 ntBASIC0.91□□□□□ -2.26
CXCL12P48061 RNU6-440P-201ENST00000390882 105 ntBASIC0.91□□□□□ -2.26
CXCL12P48061 MRPL42P3-201ENST00000401492 326 ntBASIC0.91□□□□□ -2.26
CXCL12P48061 MIR548K-201ENST00000408406 116 ntBASIC0.91□□□□□ -2.26
CXCL12P48061 MIR1285-1-201ENST00000408593 84 ntBASIC0.91□□□□□ -2.26
CXCL12P48061 RNU6-1050P-201ENST00000410388 107 ntBASIC0.91□□□□□ -2.26
CXCL12P48061 SNX2P2-201ENST00000424553 323 ntBASIC0.91□□□□□ -2.26
CXCL12P48061 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.91□□□□□ -2.26
CXCL12P48061 RPS3AP52-201ENST00000435639 297 ntBASIC0.91□□□□□ -2.26
CXCL12P48061 MTND1P34-201ENST00000438556 671 ntBASIC0.91□□□□□ -2.26
CXCL12P48061 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC0.91□□□□□ -2.26
CXCL12P48061 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.91□□□□□ -2.26
CXCL12P48061 RNU7-99P-201ENST00000516271 62 ntBASIC0.91□□□□□ -2.26
CXCL12P48061 RNU6-1016P-201ENST00000516689 94 ntBASIC0.91□□□□□ -2.26
CXCL12P48061 AF235103.2-201ENST00000525753 346 ntBASIC0.91□□□□□ -2.26
CXCL12P48061 APOOP3-201ENST00000536787 586 ntBASIC0.91□□□□□ -2.26
CXCL12P48061 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC0.91□□□□□ -2.26
CXCL12P48061 MIR4438-201ENST00000585271 93 ntBASIC0.91□□□□□ -2.26
CXCL12P48061 AC125232.2-201ENST00000592457 143 ntBASIC0.91□□□□□ -2.26
CXCL12P48061 AL050343.2-201ENST00000607338 280 ntBASIC0.91□□□□□ -2.26
CXCL12P48061 AC084782.3-201ENST00000612282 578 ntBASIC0.91□□□□□ -2.26
CXCL12P48061 RNU6-1123P-201ENST00000362347 106 ntBASIC0.9□□□□□ -2.27
CXCL12P48061 RNU6-950P-201ENST00000384651 107 ntBASIC0.9□□□□□ -2.27
CXCL12P48061 RNU6-510P-201ENST00000391239 108 ntBASIC0.9□□□□□ -2.27
CXCL12P48061 MIR190B-201ENST00000401119 79 ntBASIC0.9□□□□□ -2.27
CXCL12P48061 RN7SKP200-201ENST00000410564 320 ntBASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 117.8 ms