Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC-1.01□□□□□ -2.57
CUX1P39880 AC091951.3-201ENST00000504093 246 ntBASIC-1.01□□□□□ -2.57
CUX1P39880 RNU2-10P-201ENST00000516375 211 ntBASIC-1.01□□□□□ -2.57
CUX1P39880 SNORA18.7-201ENST00000516910 131 ntBASIC-1.01□□□□□ -2.57
CUX1P39880 SCARNA11.2-201ENST00000517183 154 ntBASIC-1.01□□□□□ -2.57
CUX1P39880 ADI1P3-201ENST00000549509 470 ntBASIC-1.01□□□□□ -2.57
CUX1P39880 AL512347.1-201ENST00000566420 503 ntBASIC-1.01□□□□□ -2.57
CUX1P39880 AC104072.1-201ENST00000568817 668 ntBASIC-1.01□□□□□ -2.57
CUX1P39880 MIR5692A1-201ENST00000580523 69 ntBASIC-1.01□□□□□ -2.57
CUX1P39880 AL445435.1-201ENST00000604232 665 ntBASIC-1.01□□□□□ -2.57
CUX1P39880 AC018462.2-201ENST00000605375 395 ntBASIC-1.01□□□□□ -2.57
CUX1P39880 AC138649.3-201ENST00000622154 254 ntBASIC-1.01□□□□□ -2.57
CUX1P39880 MIR6514-201ENST00000622549 70 ntBASIC-1.01□□□□□ -2.57
CUX1P39880 SCARNA4-201ENST00000629045 128 ntBASIC-1.01□□□□□ -2.57
CUX1P39880 SNORA67.2-201ENST00000384300 149 ntBASIC-1.02□□□□□ -2.57
CUX1P39880 Y_RNA.555-201ENST00000384673 110 ntBASIC-1.02□□□□□ -2.57
CUX1P39880 MIR125B2-201ENST00000385128 89 ntBASIC-1.02□□□□□ -2.57
CUX1P39880 AL355143.1-201ENST00000407101 841 ntBASIC-1.02□□□□□ -2.57
CUX1P39880 MIR1285-2-201ENST00000408311 88 ntBASIC-1.02□□□□□ -2.57
CUX1P39880 RNU6-1064P-201ENST00000410626 104 ntBASIC-1.02□□□□□ -2.57
CUX1P39880 SNORA27.4-201ENST00000516650 95 ntBASIC-1.02□□□□□ -2.57
CUX1P39880 RNU2-56P-201ENST00000516826 190 ntBASIC-1.02□□□□□ -2.57
CUX1P39880 RNU6-58P-201ENST00000517143 103 ntBASIC-1.02□□□□□ -2.57
CUX1P39880 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC-1.02□□□□□ -2.57
CUX1P39880 AC121247.2-201ENST00000604776 136 ntBASIC-1.02□□□□□ -2.57
CUX1P39880 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC-1.02□□□□□ -2.57
CUX1P39880 AC063944.3-201ENST00000609969 533 ntBASIC-1.02□□□□□ -2.57
CUX1P39880 AC091304.10-201ENST00000641554 121 ntBASIC-1.02□□□□□ -2.57
CUX1P39880 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.03□□□□□ -2.57
CUX1P39880 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.03□□□□□ -2.57
CUX1P39880 RNU6-1048P-201ENST00000364054 107 ntBASIC-1.03□□□□□ -2.57
CUX1P39880 RNU6-341P-201ENST00000516973 96 ntBASIC-1.03□□□□□ -2.57
CUX1P39880 RNA5SP169-201ENST00000517268 117 ntBASIC-1.03□□□□□ -2.57
CUX1P39880 MIR5706-201ENST00000579841 80 ntBASIC-1.03□□□□□ -2.57
CUX1P39880 AC091178.2-201ENST00000584401 117 ntBASIC-1.03□□□□□ -2.57
CUX1P39880 SNORD92-201ENST00000585078 85 ntBASIC-1.03□□□□□ -2.57
CUX1P39880 AC006380.1-201ENST00000603598 186 ntBASIC-1.03□□□□□ -2.57
CUX1P39880 AC005562.2-201ENST00000618264 111 ntBASIC-1.03□□□□□ -2.57
CUX1P39880 MIR4251-201ENST00000635819 61 ntBASIC-1.03□□□□□ -2.57
CUX1P39880 SNORD14.1-201ENST00000365609 90 ntBASIC-1.04□□□□□ -2.58
CUX1P39880 MIR452-201ENST00000385020 85 ntBASIC-1.04□□□□□ -2.58
CUX1P39880 RPS29P13-201ENST00000402041 169 ntBASIC-1.04□□□□□ -2.58
CUX1P39880 ELOCP17-201ENST00000414751 326 ntBASIC-1.04□□□□□ -2.58
CUX1P39880 MTND4LP14-201ENST00000429447 288 ntBASIC-1.04□□□□□ -2.58
CUX1P39880 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC-1.04□□□□□ -2.58
CUX1P39880 RNU6-469P-201ENST00000516253 101 ntBASIC-1.04□□□□□ -2.58
CUX1P39880 RNU6-1225P-201ENST00000516336 65 ntBASIC-1.04□□□□□ -2.58
CUX1P39880 AC093023.1-201ENST00000547375 507 ntBASIC-1.04□□□□□ -2.58
CUX1P39880 RPL21P9-201ENST00000556149 474 ntBASIC-1.04□□□□□ -2.58
CUX1P39880 MIR4441-201ENST00000582623 100 ntBASIC-1.04□□□□□ -2.58
CUX1P39880 AC012467.1-201ENST00000607740 256 ntBASIC-1.04□□□□□ -2.58
CUX1P39880 AC245008.1-201ENST00000608123 476 ntBASIC-1.04□□□□□ -2.58
CUX1P39880 RNA5SP192-201ENST00000364404 120 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 MIR320C1-201ENST00000408566 88 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 AL158050.1-201ENST00000416077 457 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC-1.05□□□□□ -2.58
CUX1P39880 AC098592.1-201ENST00000419352 333 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 MTND1P14-201ENST00000427400 950 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 MTCYBP42-201ENST00000444653 1130 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 AC009237.7-201ENST00000447357 229 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 AP000542.1-201ENST00000448473 371 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 SUMO1P2-201ENST00000452524 304 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 RNU7-156P-201ENST00000517214 74 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 AC040926.1-201ENST00000530195 238 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 MIR3912-201ENST00000577566 105 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 AC087683.1-201ENST00000591187 441 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC-1.05□□□□□ -2.58
CUX1P39880 AC022960.3-201ENST00000619794 441 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 ZNF204P-201ENST00000416749 2397 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 RNY3P13-201ENST00000365542 102 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 RNU6-25P-201ENST00000383873 107 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 Y_RNA.439-201ENST00000384119 94 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 RNU6-190P-201ENST00000384154 102 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 Y_RNA.504-201ENST00000384481 104 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 RNU6-29P-201ENST00000384637 107 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 AL031779.1-201ENST00000415663 330 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 AC244250.2-201ENST00000418731 148 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 AL353572.1-201ENST00000442490 417 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 AC109479.2-201ENST00000517842 174 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 AC090572.1-201ENST00000519251 160 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 AC105029.1-201ENST00000520250 669 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC-1.05□□□□□ -2.58
CUX1P39880 AP003168.1-201ENST00000530091 307 ntBASIC-1.05□□□□□ -2.58
CUX1P39880 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC-1.05□□□□□ -2.58
CUX1P39880 SNORA1B-201ENST00000362535 133 ntBASIC-1.06□□□□□ -2.58
CUX1P39880 RNU6-428P-201ENST00000362942 107 ntBASIC-1.06□□□□□ -2.58
CUX1P39880 SNORD45.3-201ENST00000363836 72 ntBASIC-1.06□□□□□ -2.58
CUX1P39880 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC-1.06□□□□□ -2.58
CUX1P39880 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC-1.06□□□□□ -2.58
CUX1P39880 AL360271.2-201ENST00000447710 161 ntBASIC-1.06□□□□□ -2.58
CUX1P39880 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC-1.06□□□□□ -2.58
CUX1P39880 AC068587.5-201ENST00000528506 175 ntBASIC-1.06□□□□□ -2.58
CUX1P39880 AP002004.2-201ENST00000531656 154 ntBASIC-1.06□□□□□ -2.58
CUX1P39880 MIR4752-201ENST00000579672 72 ntBASIC-1.06□□□□□ -2.58
CUX1P39880 AP000753.3-201ENST00000604083 169 ntBASIC-1.06□□□□□ -2.58
CUX1P39880 AL450270.1-201ENST00000606160 391 ntBASIC-1.06□□□□□ -2.58
CUX1P39880 MIR6507-201ENST00000613630 70 ntBASIC-1.06□□□□□ -2.58
CUX1P39880 MIR377-201ENST00000362145 69 ntBASIC-1.07□□□□□ -2.58
CUX1P39880 AC117470.1-201ENST00000381974 330 ntBASIC-1.07□□□□□ -2.58
CUX1P39880 RNU6-1104P-201ENST00000384723 104 ntBASIC-1.07□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 586.4 ms