Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 RNU7-187P-201ENST00000458985 68 ntBASIC0.13□□□□□ -2.39
SDCBPO00560 RPL30P10-201ENST00000488148 337 ntBASIC0.13□□□□□ -2.39
SDCBPO00560 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC0.13□□□□□ -2.39
SDCBPO00560 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.13□□□□□ -2.39
SDCBPO00560 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC0.13□□□□□ -2.39
SDCBPO00560 MIR6515-201ENST00000619843 57 ntBASIC0.13□□□□□ -2.39
SDCBPO00560 AC006504.8-201ENST00000621046 635 ntBASIC0.13□□□□□ -2.39
SDCBPO00560 AC005609.4-201ENST00000625071 447 ntBASIC0.13□□□□□ -2.39
SDCBPO00560 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.12□□□□□ -2.39
SDCBPO00560 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC0.12□□□□□ -2.39
SDCBPO00560 RNU6-369P-201ENST00000362515 102 ntBASIC0.12□□□□□ -2.39
SDCBPO00560 Y_RNA.122-201ENST00000363331 96 ntBASIC0.12□□□□□ -2.39
SDCBPO00560 SNORD113-7-201ENST00000363762 77 ntBASIC0.12□□□□□ -2.39
SDCBPO00560 Y_RNA.184-201ENST00000363884 108 ntBASIC0.12□□□□□ -2.39
SDCBPO00560 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC0.12□□□□□ -2.39
SDCBPO00560 RNU6-159P-201ENST00000391080 106 ntBASIC0.12□□□□□ -2.39
SDCBPO00560 RNA5SP95-201ENST00000410319 137 ntBASIC0.12□□□□□ -2.39
SDCBPO00560 RNA5SP511-201ENST00000410487 115 ntBASIC0.12□□□□□ -2.39
SDCBPO00560 RNU6-1304P-201ENST00000411374 106 ntBASIC0.12□□□□□ -2.39
SDCBPO00560 MTCO2P19-201ENST00000427513 598 ntBASIC0.12□□□□□ -2.39
SDCBPO00560 NDUFA5P4-201ENST00000436704 385 ntBASIC0.12□□□□□ -2.39
SDCBPO00560 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC0.12□□□□□ -2.39
SDCBPO00560 SNORA19.2-201ENST00000516013 114 ntBASIC0.12□□□□□ -2.39
SDCBPO00560 RNU6-1332P-201ENST00000516666 104 ntBASIC0.12□□□□□ -2.39
SDCBPO00560 AC120024.3-201ENST00000603167 156 ntBASIC0.12□□□□□ -2.39
SDCBPO00560 SNORD114-23-201ENST00000363536 72 ntBASIC0.11□□□□□ -2.39
SDCBPO00560 RNU4-9P-201ENST00000364951 139 ntBASIC0.11□□□□□ -2.39
SDCBPO00560 RNU6-342P-201ENST00000384521 104 ntBASIC0.11□□□□□ -2.39
SDCBPO00560 MIR216A-201ENST00000385063 110 ntBASIC0.11□□□□□ -2.39
SDCBPO00560 MIR516B2-201ENST00000385190 85 ntBASIC0.11□□□□□ -2.39
SDCBPO00560 SNORD111-201ENST00000408139 94 ntBASIC0.11□□□□□ -2.39
SDCBPO00560 MIR1295A-201ENST00000408463 79 ntBASIC0.11□□□□□ -2.39
SDCBPO00560 MIR1298-201ENST00000408783 112 ntBASIC0.11□□□□□ -2.39
SDCBPO00560 RNU6-994P-201ENST00000410507 111 ntBASIC0.11□□□□□ -2.39
SDCBPO00560 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC0.11□□□□□ -2.39
SDCBPO00560 MTCO1P20-201ENST00000425366 358 ntBASIC0.11□□□□□ -2.39
SDCBPO00560 AL606489.2-201ENST00000433886 234 ntBASIC0.11□□□□□ -2.39
SDCBPO00560 AL392103.1-201ENST00000447000 198 ntBASIC0.11□□□□□ -2.39
SDCBPO00560 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.11□□□□□ -2.39
SDCBPO00560 AC114811.1-201ENST00000507207 168 ntBASIC0.11□□□□□ -2.39
SDCBPO00560 AC093303.1-201ENST00000514549 295 ntBASIC0.11□□□□□ -2.39
SDCBPO00560 RNU6-1096P-201ENST00000517089 102 ntBASIC0.11□□□□□ -2.39
SDCBPO00560 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC0.11□□□□□ -2.39
SDCBPO00560 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC0.11□□□□□ -2.39
SDCBPO00560 RPL21P9-201ENST00000556149 474 ntBASIC0.11□□□□□ -2.39
SDCBPO00560 MIR4431-201ENST00000579990 94 ntBASIC0.11□□□□□ -2.39
SDCBPO00560 AC100830.2-201ENST00000581636 240 ntBASIC0.11□□□□□ -2.39
SDCBPO00560 AC010999.1-201ENST00000611856 324 ntBASIC0.11□□□□□ -2.39
SDCBPO00560 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.11□□□□□ -2.39
SDCBPO00560 AC090625.1-201ENST00000357130 210 ntBASIC0.1□□□□□ -2.39
SDCBPO00560 Y_RNA.179-201ENST00000363844 90 ntBASIC0.1□□□□□ -2.39
SDCBPO00560 RNU6-407P-201ENST00000365280 104 ntBASIC0.1□□□□□ -2.39
SDCBPO00560 RNU6-1327P-201ENST00000365302 105 ntBASIC0.1□□□□□ -2.39
SDCBPO00560 RNU6-117P-201ENST00000365415 107 ntBASIC0.1□□□□□ -2.39
SDCBPO00560 RNU6-376P-201ENST00000384731 106 ntBASIC0.1□□□□□ -2.39
SDCBPO00560 MIR520C-201ENST00000385005 87 ntBASIC0.1□□□□□ -2.39
SDCBPO00560 MIR153-2-201ENST00000385225 87 ntBASIC0.1□□□□□ -2.39
SDCBPO00560 RNA5SP299-201ENST00000391203 116 ntBASIC0.1□□□□□ -2.39
SDCBPO00560 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.1□□□□□ -2.39
SDCBPO00560 MTCO3P10-201ENST00000455912 772 ntBASIC0.1□□□□□ -2.39
SDCBPO00560 AC067940.1-201ENST00000458411 300 ntBASIC0.1□□□□□ -2.39
SDCBPO00560 CYCTP-201ENST00000504253 315 ntBASIC0.1□□□□□ -2.39
SDCBPO00560 MTND1P22-201ENST00000510572 951 ntBASIC0.1□□□□□ -2.39
SDCBPO00560 RNA5SP20-201ENST00000515976 84 ntBASIC0.1□□□□□ -2.39
SDCBPO00560 SNORA74.3-201ENST00000517108 154 ntBASIC0.1□□□□□ -2.39
SDCBPO00560 MTCO2P4-201ENST00000517968 247 ntBASIC0.1□□□□□ -2.39
SDCBPO00560 AC092807.2-201ENST00000609367 243 ntBASIC0.1□□□□□ -2.39
SDCBPO00560 AL136317.1-201ENST00000612653 226 ntBASIC0.1□□□□□ -2.39
SDCBPO00560 AL138726.1-201ENST00000614873 333 ntBASIC0.1□□□□□ -2.39
SDCBPO00560 AL158063.1-201ENST00000615349 536 ntBASIC0.1□□□□□ -2.39
SDCBPO00560 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.1□□□□□ -2.39
SDCBPO00560 RNU6-349P-201ENST00000362402 107 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 SNORA27.1-201ENST00000362604 124 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 Y_RNA.151-201ENST00000363566 112 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 SNORD113.3-201ENST00000364630 78 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 RNU4-66P-201ENST00000365199 138 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 RNU6-214P-201ENST00000384130 107 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 RNU6-933P-201ENST00000384424 107 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 MIR562-201ENST00000384894 95 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 MIR573-201ENST00000384964 99 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.09□□□□□ -2.4
SDCBPO00560 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.09□□□□□ -2.4
SDCBPO00560 AL137792.2-201ENST00000443484 235 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC0.09□□□□□ -2.4
SDCBPO00560 NDUFA4P2-201ENST00000489989 244 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 SNORA40.12-201ENST00000516329 111 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 RNU6-107P-201ENST00000516643 102 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 RNU6-1198P-201ENST00000516904 67 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 MIR4764-201ENST00000580680 88 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 MIR4300-201ENST00000581016 96 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 AC027449.1-201ENST00000608890 407 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 AC072046.2-201ENST00000618366 268 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 AC008133.2-201ENST00000624540 351 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 AC027279.3-201ENST00000625055 122 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 MIR924-201ENST00000638017 53 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 AC068137.4-201ENST00000638485 296 ntBASIC0.09□□□□□ -2.4
SDCBPO00560 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.08□□□□□ -2.4
SDCBPO00560 RNU6-136P-201ENST00000384663 107 ntBASIC0.08□□□□□ -2.4
SDCBPO00560 MIR452-201ENST00000385020 85 ntBASIC0.08□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms