Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 HMGN2P34-201ENST00000437647 269 ntBASIC2.74□□□□□ -1.97
CBX4O00257 AC011406.1-201ENST00000512440 370 ntBASIC2.74□□□□□ -1.97
CBX4O00257 RNU6-1337P-201ENST00000516525 95 ntBASIC2.74□□□□□ -1.97
CBX4O00257 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
CBX4O00257 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.74□□□□□ -1.97
CBX4O00257 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.73□□□□□ -1.97
CBX4O00257 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
CBX4O00257 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
CBX4O00257 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
CBX4O00257 Y_RNA.29-201ENST00000362570 113 ntBASIC2.73□□□□□ -1.97
CBX4O00257 RNU6-801P-201ENST00000364087 105 ntBASIC2.73□□□□□ -1.97
CBX4O00257 Y_RNA.274-201ENST00000364714 101 ntBASIC2.73□□□□□ -1.97
CBX4O00257 SNORA72.4-201ENST00000384174 132 ntBASIC2.73□□□□□ -1.97
CBX4O00257 Y_RNA.785-201ENST00000384290 109 ntBASIC2.73□□□□□ -1.97
CBX4O00257 MIR181B1-201ENST00000385240 110 ntBASIC2.73□□□□□ -1.97
CBX4O00257 AL135790.2-201ENST00000437701 267 ntBASIC2.73□□□□□ -1.97
CBX4O00257 AL353689.1-201ENST00000438895 199 ntBASIC2.73□□□□□ -1.97
CBX4O00257 RPL39P40-201ENST00000445481 146 ntBASIC2.73□□□□□ -1.97
CBX4O00257 RNU6-182P-201ENST00000516970 105 ntBASIC2.73□□□□□ -1.97
CBX4O00257 SUMO2P18-201ENST00000518873 252 ntBASIC2.73□□□□□ -1.97
CBX4O00257 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.73□□□□□ -1.97
CBX4O00257 MIR4635-201ENST00000583759 79 ntBASIC2.73□□□□□ -1.97
CBX4O00257 MIR4438-201ENST00000585271 93 ntBASIC2.73□□□□□ -1.97
CBX4O00257 AL008718.3-201ENST00000610217 321 ntBASIC2.73□□□□□ -1.97
CBX4O00257 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.73□□□□□ -1.97
CBX4O00257 U2.15-201ENST00000611544 191 ntBASIC2.73□□□□□ -1.97
CBX4O00257 U2.16-201ENST00000613119 191 ntBASIC2.73□□□□□ -1.97
CBX4O00257 U2.12-201ENST00000613778 191 ntBASIC2.73□□□□□ -1.97
CBX4O00257 U2.20-201ENST00000613956 192 ntBASIC2.73□□□□□ -1.97
CBX4O00257 U2.9-201ENST00000615427 191 ntBASIC2.73□□□□□ -1.97
CBX4O00257 U2.11-201ENST00000616345 191 ntBASIC2.73□□□□□ -1.97
CBX4O00257 U2.2-201ENST00000616535 191 ntBASIC2.73□□□□□ -1.97
CBX4O00257 U2.3-201ENST00000617785 191 ntBASIC2.73□□□□□ -1.97
CBX4O00257 U2.19-201ENST00000618602 191 ntBASIC2.73□□□□□ -1.97
CBX4O00257 RNU2-1-201ENST00000618664 191 ntBASIC2.73□□□□□ -1.97
CBX4O00257 U2.6-201ENST00000619225 191 ntBASIC2.73□□□□□ -1.97
CBX4O00257 U2.5-201ENST00000619465 191 ntBASIC2.73□□□□□ -1.97
CBX4O00257 U2.10-201ENST00000620268 191 ntBASIC2.73□□□□□ -1.97
CBX4O00257 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC2.73□□□□□ -1.97
CBX4O00257 AC245060.5-201ENST00000610778 3293 ntBASIC2.73□□□□□ -1.97
CBX4O00257 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.72□□□□□ -1.97
CBX4O00257 MIR411-201ENST00000362239 96 ntBASIC2.72□□□□□ -1.97
CBX4O00257 RNU6-899P-201ENST00000363947 107 ntBASIC2.72□□□□□ -1.97
CBX4O00257 MIR518C-201ENST00000384822 101 ntBASIC2.72□□□□□ -1.97
CBX4O00257 MIR29C-201ENST00000385231 88 ntBASIC2.72□□□□□ -1.97
CBX4O00257 SNORA26.5-201ENST00000391215 123 ntBASIC2.72□□□□□ -1.97
CBX4O00257 HSPE1P21-201ENST00000438283 308 ntBASIC2.72□□□□□ -1.97
CBX4O00257 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.72□□□□□ -1.97
CBX4O00257 RPS20P10-201ENST00000451209 253 ntBASIC2.72□□□□□ -1.97
CBX4O00257 Y_RNA.637-201ENST00000459424 114 ntBASIC2.72□□□□□ -1.97
CBX4O00257 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.72□□□□□ -1.97
CBX4O00257 RNU6-1278P-201ENST00000516130 107 ntBASIC2.72□□□□□ -1.97
CBX4O00257 SNORA81.3-201ENST00000517283 198 ntBASIC2.72□□□□□ -1.97
CBX4O00257 Z83818.1-201ENST00000603584 150 ntBASIC2.72□□□□□ -1.97
CBX4O00257 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
CBX4O00257 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
CBX4O00257 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
CBX4O00257 AL356292.1-201ENST00000283110 373 ntBASIC2.71□□□□□ -1.98
CBX4O00257 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
CBX4O00257 snoU2-30.2-201ENST00000362805 70 ntBASIC2.71□□□□□ -1.98
CBX4O00257 SNORD114-6-201ENST00000364393 72 ntBASIC2.71□□□□□ -1.98
CBX4O00257 Y_RNA.262-201ENST00000364641 102 ntBASIC2.71□□□□□ -1.98
CBX4O00257 Y_RNA.304-201ENST00000365011 112 ntBASIC2.71□□□□□ -1.98
CBX4O00257 RNU1-148P-201ENST00000384472 162 ntBASIC2.71□□□□□ -1.98
CBX4O00257 MTCO2P33-201ENST00000402100 465 ntBASIC2.71□□□□□ -1.98
CBX4O00257 Y_RNA.793-201ENST00000411222 111 ntBASIC2.71□□□□□ -1.98
CBX4O00257 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.71□□□□□ -1.98
CBX4O00257 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.71□□□□□ -1.98
CBX4O00257 RN7SL636P-201ENST00000497504 294 ntBASIC2.71□□□□□ -1.98
CBX4O00257 AC096725.1-201ENST00000514266 313 ntBASIC2.71□□□□□ -1.98
CBX4O00257 RNU6-1041P-201ENST00000516254 102 ntBASIC2.71□□□□□ -1.98
CBX4O00257 MIR4658-201ENST00000584344 65 ntBASIC2.71□□□□□ -1.98
CBX4O00257 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.71□□□□□ -1.98
CBX4O00257 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.71□□□□□ -1.98
CBX4O00257 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.71□□□□□ -1.98
CBX4O00257 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CBX4O00257 SNORD115-3-201ENST00000363100 82 ntBASIC2.7□□□□□ -1.98
CBX4O00257 RNU2-64P-201ENST00000411315 191 ntBASIC2.7□□□□□ -1.98
CBX4O00257 ATP5J2P3-201ENST00000451550 258 ntBASIC2.7□□□□□ -1.98
CBX4O00257 Y_RNA.644-201ENST00000459006 113 ntBASIC2.7□□□□□ -1.98
CBX4O00257 U8.19-201ENST00000459095 133 ntBASIC2.7□□□□□ -1.98
CBX4O00257 RPL36AP21-201ENST00000490372 323 ntBASIC2.7□□□□□ -1.98
CBX4O00257 RPS29P21-201ENST00000496272 170 ntBASIC2.7□□□□□ -1.98
CBX4O00257 YWHAEP4-201ENST00000505390 198 ntBASIC2.7□□□□□ -1.98
CBX4O00257 Y_RNA.674-201ENST00000516362 113 ntBASIC2.7□□□□□ -1.98
CBX4O00257 RNA5SP148-201ENST00000516527 94 ntBASIC2.7□□□□□ -1.98
CBX4O00257 RNU7-172P-201ENST00000517125 64 ntBASIC2.7□□□□□ -1.98
CBX4O00257 AC024405.2-202ENST00000532731 184 ntBASIC2.7□□□□□ -1.98
CBX4O00257 AL031274.2-201ENST00000599419 203 ntBASIC2.7□□□□□ -1.98
CBX4O00257 AC011921.3-201ENST00000605540 361 ntBASIC2.7□□□□□ -1.98
CBX4O00257 MIR6817-201ENST00000615588 66 ntBASIC2.7□□□□□ -1.98
CBX4O00257 AC013791.1-201ENST00000616619 62 ntBASIC2.7□□□□□ -1.98
CBX4O00257 AC068647.2-201ENST00000637380 353 ntBASIC2.7□□□□□ -1.98
CBX4O00257 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
CBX4O00257 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.7□□□□□ -1.98
CBX4O00257 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
CBX4O00257 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.7□□□□□ -1.98
CBX4O00257 AC134026.1-201ENST00000623249 2239 ntBASIC2.69□□□□□ -1.98
CBX4O00257 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.69□□□□□ -1.98
CBX4O00257 RNU6-23P-201ENST00000363283 107 ntBASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms