Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
FOXA2Q9Y261 Y_RNA.166-201ENST00000363730 102 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 Y_RNA.279-201ENST00000364763 95 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 RNU6-407P-201ENST00000365280 104 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 SNORA20B-201ENST00000384220 132 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 Y_RNA.505-201ENST00000384489 102 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 MT-TL1-201ENST00000386347 75 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 ELOCP21-201ENST00000412558 336 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.31□□□□□ -2.2
FOXA2Q9Y261 MTCO3P19-201ENST00000415864 321 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 MTND1P2-201ENST00000430604 821 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 PGBD4P5-201ENST00000445958 426 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 U8.22-201ENST00000459141 133 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.31□□□□□ -2.2
FOXA2Q9Y261 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.31□□□□□ -2.2
FOXA2Q9Y261 AC097462.1-201ENST00000514125 324 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 RN7SKP49-201ENST00000516675 260 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 RNU7-172P-201ENST00000517125 64 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.31□□□□□ -2.2
FOXA2Q9Y261 SUB1P3-201ENST00000564581 315 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 MIR4255-201ENST00000579351 72 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 MIR1244-1-201ENST00000612829 85 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 AL357075.2-201ENST00000614906 189 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 MIR7843-201ENST00000622274 79 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 MIR1244-3-201ENST00000635744 85 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 MIR1244-2-201ENST00000636449 85 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 MIR1244-4-202ENST00000636813 85 ntBASIC1.31□□□□□ -2.2
FOXA2Q9Y261 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.3□□□□□ -2.2
FOXA2Q9Y261 RNA5SP475-201ENST00000410568 110 ntBASIC1.3□□□□□ -2.2
FOXA2Q9Y261 RN7SKP101-201ENST00000411376 320 ntBASIC1.3□□□□□ -2.2
FOXA2Q9Y261 AC114482.1-201ENST00000418010 247 ntBASIC1.3□□□□□ -2.2
FOXA2Q9Y261 RPL30P13-201ENST00000418873 348 ntBASIC1.3□□□□□ -2.2
FOXA2Q9Y261 AL591806.2-201ENST00000433122 173 ntBASIC1.3□□□□□ -2.2
FOXA2Q9Y261 MIR2053-201ENST00000459295 91 ntBASIC1.3□□□□□ -2.2
FOXA2Q9Y261 RNU6-625P-201ENST00000459412 107 ntBASIC1.3□□□□□ -2.2
FOXA2Q9Y261 MTND4P17-201ENST00000470444 350 ntBASIC1.3□□□□□ -2.2
FOXA2Q9Y261 RNU6-264P-201ENST00000517134 104 ntBASIC1.3□□□□□ -2.2
FOXA2Q9Y261 AC018448.1-201ENST00000552843 316 ntBASIC1.3□□□□□ -2.2
FOXA2Q9Y261 MIR3683-201ENST00000580847 82 ntBASIC1.3□□□□□ -2.2
FOXA2Q9Y261 AC104984.5-201ENST00000586878 94 ntBASIC1.3□□□□□ -2.2
FOXA2Q9Y261 AL162424.1-201ENST00000602325 221 ntBASIC1.3□□□□□ -2.2
FOXA2Q9Y261 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.3□□□□□ -2.2
FOXA2Q9Y261 MIR6715A-201ENST00000615929 79 ntBASIC1.3□□□□□ -2.2
FOXA2Q9Y261 MIR6079-201ENST00000635807 62 ntBASIC1.3□□□□□ -2.2
FOXA2Q9Y261 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
FOXA2Q9Y261 AC006026.1-201ENST00000444025 1803 ntBASIC1.29□□□□□ -2.2
FOXA2Q9Y261 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
FOXA2Q9Y261 MTND5P10-201ENST00000603719 1809 ntBASIC1.29□□□□□ -2.2
FOXA2Q9Y261 MIR26B-201ENST00000362251 77 ntBASIC1.29□□□□□ -2.2
FOXA2Q9Y261 RNU6-99P-201ENST00000364721 107 ntBASIC1.29□□□□□ -2.2
FOXA2Q9Y261 AL355796.1-201ENST00000406706 323 ntBASIC1.29□□□□□ -2.2
FOXA2Q9Y261 RNU6-370P-201ENST00000411008 104 ntBASIC1.29□□□□□ -2.2
FOXA2Q9Y261 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.29□□□□□ -2.2
FOXA2Q9Y261 CYCSP49-201ENST00000420810 319 ntBASIC1.29□□□□□ -2.2
FOXA2Q9Y261 STAG3L5P-204ENST00000443759 179 ntBASIC1.29□□□□□ -2.2
FOXA2Q9Y261 AC108210.2-201ENST00000503681 201 ntBASIC1.29□□□□□ -2.2
FOXA2Q9Y261 RNA5SP20-201ENST00000515976 84 ntBASIC1.29□□□□□ -2.2
FOXA2Q9Y261 RNU6-1213P-201ENST00000517075 94 ntBASIC1.29□□□□□ -2.2
FOXA2Q9Y261 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.29□□□□□ -2.2
FOXA2Q9Y261 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.29□□□□□ -2.2
FOXA2Q9Y261 AL161670.1-201ENST00000554348 137 ntBASIC1.29□□□□□ -2.2
FOXA2Q9Y261 AL390123.1-201ENST00000603216 237 ntBASIC1.29□□□□□ -2.2
FOXA2Q9Y261 SNORA28-201ENST00000606769 126 ntBASIC1.29□□□□□ -2.2
FOXA2Q9Y261 TPTEP1-208ENST00000636884 213 ntBASIC1.29□□□□□ -2.2
FOXA2Q9Y261 AP000648.3-201ENST00000623539 4507 ntBASIC1.28□□□□□ -2.2
FOXA2Q9Y261 RNU1-22P-201ENST00000363334 158 ntBASIC1.28□□□□□ -2.2
FOXA2Q9Y261 RNA5SP190-201ENST00000365222 118 ntBASIC1.28□□□□□ -2.2
FOXA2Q9Y261 SNORD26-201ENST00000384147 75 ntBASIC1.28□□□□□ -2.2
FOXA2Q9Y261 MIR625-201ENST00000385047 85 ntBASIC1.28□□□□□ -2.2
FOXA2Q9Y261 Y_RNA.599-201ENST00000410489 109 ntBASIC1.28□□□□□ -2.2
FOXA2Q9Y261 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.28□□□□□ -2.2
FOXA2Q9Y261 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.28□□□□□ -2.2
FOXA2Q9Y261 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.28□□□□□ -2.2
FOXA2Q9Y261 AC018865.2-201ENST00000423631 129 ntBASIC1.28□□□□□ -2.2
FOXA2Q9Y261 snoU13.23-201ENST00000458863 104 ntBASIC1.28□□□□□ -2.2
FOXA2Q9Y261 RPL30P7-201ENST00000479312 323 ntBASIC1.28□□□□□ -2.2
FOXA2Q9Y261 SNORA40.9-201ENST00000515895 93 ntBASIC1.28□□□□□ -2.2
FOXA2Q9Y261 Y_RNA.691-201ENST00000516611 103 ntBASIC1.28□□□□□ -2.2
FOXA2Q9Y261 RNU2-56P-201ENST00000516826 190 ntBASIC1.28□□□□□ -2.2
FOXA2Q9Y261 MIR2355-201ENST00000517199 87 ntBASIC1.28□□□□□ -2.2
FOXA2Q9Y261 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.28□□□□□ -2.2
FOXA2Q9Y261 AL512310.8-201ENST00000550183 120 ntBASIC1.28□□□□□ -2.2
FOXA2Q9Y261 CYP3A52P-201ENST00000563326 91 ntBASIC1.28□□□□□ -2.2
FOXA2Q9Y261 AC016727.1-205ENST00000605437 569 ntBASIC1.28□□□□□ -2.2
FOXA2Q9Y261 AL513423.1-201ENST00000621695 132 ntBASIC1.28□□□□□ -2.2
FOXA2Q9Y261 SNORD3E-202ENST00000627253 216 ntBASIC1.28□□□□□ -2.2
FOXA2Q9Y261 MIR3674-201ENST00000636576 68 ntBASIC1.28□□□□□ -2.2
FOXA2Q9Y261 Y_RNA.265-201ENST00000364677 108 ntBASIC1.27□□□□□ -2.21
FOXA2Q9Y261 RNU6-376P-201ENST00000384731 106 ntBASIC1.27□□□□□ -2.21
FOXA2Q9Y261 MIR562-201ENST00000384894 95 ntBASIC1.27□□□□□ -2.21
FOXA2Q9Y261 PDCL2P1-201ENST00000419302 352 ntBASIC1.27□□□□□ -2.21
FOXA2Q9Y261 RAB28P5-201ENST00000427490 651 ntBASIC1.27□□□□□ -2.21
FOXA2Q9Y261 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.27□□□□□ -2.21
FOXA2Q9Y261 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.27□□□□□ -2.21
FOXA2Q9Y261 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.27□□□□□ -2.21
FOXA2Q9Y261 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.27□□□□□ -2.21
FOXA2Q9Y261 RN7SKP88-201ENST00000516847 250 ntBASIC1.27□□□□□ -2.21
FOXA2Q9Y261 AP003033.1-201ENST00000527244 415 ntBASIC1.27□□□□□ -2.21
FOXA2Q9Y261 MIR5690-201ENST00000583739 73 ntBASIC1.27□□□□□ -2.21
FOXA2Q9Y261 7SK.8-201ENST00000612110 250 ntBASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms