| CNTNAP2 | Q9UHC6 | RNU6-312P-201 | ENST00000364629 | 107 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | SNORD32A-201 | ENST00000364805 | 84 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | Y_RNA.420-201 | ENST00000384043 | 110 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | SNORA36A-201 | ENST00000384221 | 132 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | Y_RNA.563-201 | ENST00000384707 | 108 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | DEFB130A-201 | ENST00000400079 | 240 nt | APPRIS P1 TSL 1 (best) BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RPL26P27-201 | ENST00000414397 | 437 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC099548.1-201 | ENST00000421443 | 426 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AL627311.1-201 | ENST00000431514 | 115 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | DEFB130B-201 | ENST00000437818 | 240 nt | APPRIS P1 TSL 1 (best) BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | POLR2KP2-201 | ENST00000438155 | 177 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | PIGFP3-201 | ENST00000441918 | 722 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC003988.1-201 | ENST00000447198 | 578 nt | TSL 5 BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC010974.1-201 | ENST00000450509 | 374 nt | TSL 3 BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC016925.1-201 | ENST00000458303 | 298 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RNU6-1211P-201 | ENST00000459179 | 105 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | CYCTP-201 | ENST00000504253 | 315 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AP003128.1-201 | ENST00000531414 | 448 nt | TSL 2 BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC084365.1-201 | ENST00000552470 | 310 nt | TSL 3 BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC127455.1-201 | ENST00000565496 | 145 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC009163.5-201 | ENST00000575421 | 637 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | MIR5695-201 | ENST00000579717 | 85 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AL359881.1-201 | ENST00000602916 | 267 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AP006437.1-201 | ENST00000641440 | 3685 nt | BASIC | 2.46 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RNU6-275P-201 | ENST00000364910 | 107 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RNU6-1286P-201 | ENST00000383871 | 107 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RNU6-968P-201 | ENST00000384076 | 107 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | SNORA29-201 | ENST00000384183 | 140 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RNU6-514P-201 | ENST00000384208 | 107 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RNU6-72P-201 | ENST00000384285 | 79 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | MIR549A-201 | ENST00000385268 | 96 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | SNORA46.1-201 | ENST00000391069 | 153 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | U3.37-201 | ENST00000408528 | 213 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RNA5SP247-201 | ENST00000411181 | 105 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC138623.1-201 | ENST00000418060 | 216 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AL353743.2-202 | ENST00000439544 | 473 nt | TSL 3 BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC243964.1-201 | ENST00000441814 | 261 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AL353743.2-204 | ENST00000456242 | 419 nt | TSL 3 BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | U8.19-201 | ENST00000459095 | 133 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC012055.2-201 | ENST00000504167 | 335 nt | TSL 3 BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | SCARNA8-201 | ENST00000515924 | 131 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AP001363.1-201 | ENST00000544108 | 264 nt | TSL 3 BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | LINC00645-203 | ENST00000557399 | 3512 nt | TSL 1 (best) BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | TRAV28-201 | ENST00000557548 | 323 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | LINC02253-201 | ENST00000559321 | 448 nt | TSL 2 BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | UBE2Q2P8-201 | ENST00000560644 | 102 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC103810.1-201 | ENST00000579873 | 453 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | DEFB117-201 | ENST00000602356 | 141 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC005520.5-201 | ENST00000613926 | 164 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | Y_RNA.802-201 | ENST00000614892 | 130 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC012640.5-201 | ENST00000623897 | 319 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AL109837.2-201 | ENST00000632608 | 295 nt | TSL 3 BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | DDIAS-201 | ENST00000329143 | 3367 nt | APPRIS P2 TSL 1 (best) BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | ZNF204P-201 | ENST00000416749 | 2397 nt | BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | OXR1-209 | ENST00000517566 | 4501 nt | TSL 1 (best) BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | N4BP2L2-205 | ENST00000446957 | 2071 nt | TSL 5 BASIC | 2.45 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RNU6-942P-201 | ENST00000363002 | 107 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | Y_RNA.172-201 | ENST00000363765 | 102 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RNU6-755P-201 | ENST00000364400 | 103 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RNU6-147P-201 | ENST00000383983 | 107 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | MIR221-201 | ENST00000385135 | 110 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | MIR301A-201 | ENST00000385261 | 86 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RNU6-239P-201 | ENST00000390990 | 99 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RNU6-159P-201 | ENST00000391080 | 106 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | BCL2L11-207 | ENST00000405953 | 425 nt | TSL 1 (best) BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC098614.2-201 | ENST00000426040 | 255 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | BTF3P11-201 | ENST00000426582 | 477 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC092991.1-201 | ENST00000477176 | 376 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RPL31P41-201 | ENST00000477967 | 372 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC005840.1-201 | ENST00000498412 | 377 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RNA5SP165-201 | ENST00000517142 | 115 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC068880.3-201 | ENST00000519185 | 179 nt | TSL 5 BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AP005660.1-201 | ENST00000522972 | 293 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | CYCSP26-201 | ENST00000534107 | 320 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC037487.3-201 | ENST00000606668 | 112 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RMST_6.1-201 | ENST00000611980 | 203 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC026523.1-201 | ENST00000617221 | 490 nt | TSL 5 BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC009487.4-201 | ENST00000624969 | 3585 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | ZBTB6-201 | ENST00000373659 | 4106 nt | APPRIS P1 TSL 1 (best) BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC009541.1-201 | ENST00000438279 | 2662 nt | BASIC | 2.44 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RNU6-1048P-201 | ENST00000364054 | 107 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | Y_RNA.230-201 | ENST00000364348 | 109 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RNU4-17P-201 | ENST00000365598 | 141 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | MIR518D-201 | ENST00000385014 | 87 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RNU6-460P-201 | ENST00000391158 | 108 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC092047.1-201 | ENST00000424997 | 240 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC009414.1-201 | ENST00000427200 | 443 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC092427.1-202 | ENST00000430569 | 476 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RNU6-377P-201 | ENST00000515965 | 102 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RNU6-589P-201 | ENST00000516485 | 107 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RNU6-572P-201 | ENST00000516724 | 80 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AP003097.2-201 | ENST00000530126 | 178 nt | TSL 3 BASIC | 2.43 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | MIR5194-201 | ENST00000582634 | 120 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC091932.3-201 | ENST00000624223 | 323 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | AC068631.1-220 | ENST00000630726 | 256 nt | TSL 5 BASIC | 2.43 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | KNL1-204 | ENST00000527044 | 5404 nt | TSL 5 BASIC | 2.43 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | OR5K1-202 | ENST00000642057 | 3466 nt | APPRIS P1 BASIC | 2.43 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | ZNF702P-202 | ENST00000434269 | 1966 nt | BASIC | 2.43 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | SACS-201 | ENST00000382292 | 15324 nt | APPRIS P1 TSL 5 BASIC | 2.42 | □□□□□ -2.02 | | |
| CNTNAP2 | Q9UHC6 | RNU6-899P-201 | ENST00000363947 | 107 nt | BASIC | 2.42 | □□□□□ -2.02 | | |