Protein–RNA interactions for Protein: Q9H9Y2

RPF1, Ribosome production factor 1, humanhuman

Known RBP Predictions only

Length 349 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPF1Q9H9Y2 AC009474.2-201ENST00000451383 136 ntBASIC1.61□□□□□ -2.15
RPF1Q9H9Y2 Y_RNA.632-201ENST00000459189 102 ntBASIC1.61□□□□□ -2.15
RPF1Q9H9Y2 MIR2053-201ENST00000459295 91 ntBASIC1.61□□□□□ -2.15
RPF1Q9H9Y2 Y_RNA.675-201ENST00000516389 149 ntBASIC1.61□□□□□ -2.15
RPF1Q9H9Y2 RNU1-92P-201ENST00000517017 135 ntBASIC1.61□□□□□ -2.15
RPF1Q9H9Y2 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.61□□□□□ -2.15
RPF1Q9H9Y2 AC016925.2-201ENST00000605108 242 ntBASIC1.61□□□□□ -2.15
RPF1Q9H9Y2 AC010615.1-201ENST00000594254 1764 ntBASIC1.61□□□□□ -2.15
RPF1Q9H9Y2 Y_RNA.4-201ENST00000362333 112 ntBASIC1.6□□□□□ -2.15
RPF1Q9H9Y2 Y_RNA.67-201ENST00000362870 100 ntBASIC1.6□□□□□ -2.15
RPF1Q9H9Y2 Y_RNA.70-201ENST00000362886 110 ntBASIC1.6□□□□□ -2.15
RPF1Q9H9Y2 RNU4-13P-201ENST00000364019 141 ntBASIC1.6□□□□□ -2.15
RPF1Q9H9Y2 RNU6-1019P-201ENST00000364424 107 ntBASIC1.6□□□□□ -2.15
RPF1Q9H9Y2 RNU6-1240P-201ENST00000365155 104 ntBASIC1.6□□□□□ -2.15
RPF1Q9H9Y2 RNU6-338P-201ENST00000383888 105 ntBASIC1.6□□□□□ -2.15
RPF1Q9H9Y2 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.6□□□□□ -2.15
RPF1Q9H9Y2 MTATP6P23-201ENST00000440153 476 ntBASIC1.6□□□□□ -2.15
RPF1Q9H9Y2 AC092473.1-201ENST00000441098 221 ntBASIC1.6□□□□□ -2.15
RPF1Q9H9Y2 AC093019.1-201ENST00000443135 252 ntBASIC1.6□□□□□ -2.15
RPF1Q9H9Y2 RNU7-95P-201ENST00000459222 64 ntBASIC1.6□□□□□ -2.15
RPF1Q9H9Y2 RNU6-107P-201ENST00000516643 102 ntBASIC1.6□□□□□ -2.15
RPF1Q9H9Y2 RNU6-264P-201ENST00000517134 104 ntBASIC1.6□□□□□ -2.15
RPF1Q9H9Y2 AC084781.2-201ENST00000615568 161 ntBASIC1.6□□□□□ -2.15
RPF1Q9H9Y2 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.6□□□□□ -2.15
RPF1Q9H9Y2 U6.108-201ENST00000637764 58 ntBASIC1.6□□□□□ -2.15
RPF1Q9H9Y2 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
RPF1Q9H9Y2 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.6□□□□□ -2.15
RPF1Q9H9Y2 MIR337-201ENST00000362281 93 ntBASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 RNU6-1301P-201ENST00000362724 104 ntBASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 Y_RNA.58-201ENST00000362807 102 ntBASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 Y_RNA.154-201ENST00000363624 102 ntBASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 SNORA63D-201ENST00000364359 132 ntBASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 RNY3P1-201ENST00000365085 102 ntBASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 RNY3-201ENST00000365484 102 ntBASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 Y_RNA.384-201ENST00000383909 102 ntBASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 MIR520A-201ENST00000384862 85 ntBASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 MIR1253-201ENST00000408273 105 ntBASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 EBAG9P1-201ENST00000418955 543 ntBASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 AC008134.1-201ENST00000420943 193 ntBASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 AC005908.1-201ENST00000468701 347 ntBASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 HMGN1P13-201ENST00000505795 138 ntBASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 RN7SKP49-201ENST00000516675 260 ntBASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 AP002001.1-203ENST00000534002 267 ntBASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.59□□□□□ -2.15
RPF1Q9H9Y2 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.59□□□□□ -2.16
RPF1Q9H9Y2 MIR126-201ENST00000362291 85 ntBASIC1.58□□□□□ -2.16
RPF1Q9H9Y2 RNU4-42P-201ENST00000364738 142 ntBASIC1.58□□□□□ -2.16
RPF1Q9H9Y2 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.58□□□□□ -2.16
RPF1Q9H9Y2 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.58□□□□□ -2.16
RPF1Q9H9Y2 RNU6-360P-201ENST00000390944 104 ntBASIC1.58□□□□□ -2.16
RPF1Q9H9Y2 Y_RNA.592-201ENST00000410274 109 ntBASIC1.58□□□□□ -2.16
RPF1Q9H9Y2 AC114482.1-201ENST00000418010 247 ntBASIC1.58□□□□□ -2.16
RPF1Q9H9Y2 HSPE1P9-201ENST00000440046 311 ntBASIC1.58□□□□□ -2.16
RPF1Q9H9Y2 UQCRBP2-201ENST00000447827 297 ntBASIC1.58□□□□□ -2.16
RPF1Q9H9Y2 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.58□□□□□ -2.16
RPF1Q9H9Y2 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC1.58□□□□□ -2.16
RPF1Q9H9Y2 SNORD19B-201ENST00000459623 84 ntBASIC1.58□□□□□ -2.16
RPF1Q9H9Y2 RNU6-1146P-201ENST00000516282 102 ntBASIC1.58□□□□□ -2.16
RPF1Q9H9Y2 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.58□□□□□ -2.16
RPF1Q9H9Y2 AP001094.1-201ENST00000579805 193 ntBASIC1.58□□□□□ -2.16
RPF1Q9H9Y2 AC080078.3-201ENST00000605407 463 ntBASIC1.58□□□□□ -2.16
RPF1Q9H9Y2 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.58□□□□□ -2.16
RPF1Q9H9Y2 AC073544.1-201ENST00000600110 1595 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 RNU6-414P-201ENST00000363705 104 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 SNORA4.2-201ENST00000365313 147 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 MIR625-201ENST00000385047 85 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 SNORA69.1-201ENST00000390904 137 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 FTH1P12-201ENST00000432137 551 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 AC005002.2-201ENST00000438228 269 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 AL606517.2-201ENST00000442855 241 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 UBE2V1P7-201ENST00000446395 340 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 PCNPP5-201ENST00000452246 481 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 snoU13.9-201ENST00000458927 103 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 RNU7-152P-201ENST00000458982 64 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 RNU7-169P-201ENST00000459456 61 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 TRMT112P2-201ENST00000512910 132 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 RNU6-699P-201ENST00000517081 110 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 RNU7-128P-201ENST00000517247 62 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 AC018448.1-201ENST00000552843 316 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 MIR4781-201ENST00000585250 76 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 AL359821.1-201ENST00000605519 182 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 Y_RNA.804-201ENST00000615262 101 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 ZNF209P-201ENST00000593450 2304 ntBASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.57□□□□□ -2.16
RPF1Q9H9Y2 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
RPF1Q9H9Y2 SNORD12B-201ENST00000410433 91 ntBASIC1.56□□□□□ -2.16
RPF1Q9H9Y2 RNU2-7P-201ENST00000410794 178 ntBASIC1.56□□□□□ -2.16
RPF1Q9H9Y2 AF228730.4-201ENST00000421457 183 ntBASIC1.56□□□□□ -2.16
RPF1Q9H9Y2 MTND4P28-201ENST00000426217 387 ntBASIC1.56□□□□□ -2.16
RPF1Q9H9Y2 TOMM22P2-201ENST00000430735 237 ntBASIC1.56□□□□□ -2.16
RPF1Q9H9Y2 SNRPGP13-201ENST00000442212 177 ntBASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 168 ms