Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.82□□□□□ -1.96
PCIF1Q9H4Z3 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
PCIF1Q9H4Z3 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
PCIF1Q9H4Z3 SNORA27.1-201ENST00000362604 124 ntBASIC2.81□□□□□ -1.96
PCIF1Q9H4Z3 RNU6-1180P-201ENST00000364935 107 ntBASIC2.81□□□□□ -1.96
PCIF1Q9H4Z3 RNU6-209P-201ENST00000384118 107 ntBASIC2.81□□□□□ -1.96
PCIF1Q9H4Z3 Y_RNA.500-201ENST00000384466 111 ntBASIC2.81□□□□□ -1.96
PCIF1Q9H4Z3 Y_RNA.510-201ENST00000384511 114 ntBASIC2.81□□□□□ -1.96
PCIF1Q9H4Z3 SNORA26.5-201ENST00000391215 123 ntBASIC2.81□□□□□ -1.96
PCIF1Q9H4Z3 MIR873-201ENST00000401120 77 ntBASIC2.81□□□□□ -1.96
PCIF1Q9H4Z3 AL031121.1-201ENST00000406553 254 ntBASIC2.81□□□□□ -1.96
PCIF1Q9H4Z3 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.81□□□□□ -1.96
PCIF1Q9H4Z3 AL357134.1-201ENST00000445848 426 ntBASIC2.81□□□□□ -1.96
PCIF1Q9H4Z3 AL138752.1-201ENST00000452964 351 ntBASIC2.81□□□□□ -1.96
PCIF1Q9H4Z3 SNORA70.12-201ENST00000516084 153 ntBASIC2.81□□□□□ -1.96
PCIF1Q9H4Z3 RNA5SP282-201ENST00000516355 108 ntBASIC2.81□□□□□ -1.96
PCIF1Q9H4Z3 RNU6-56P-201ENST00000516986 93 ntBASIC2.81□□□□□ -1.96
PCIF1Q9H4Z3 AC027419.1-201ENST00000522976 328 ntBASIC2.81□□□□□ -1.96
PCIF1Q9H4Z3 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.81□□□□□ -1.96
PCIF1Q9H4Z3 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.81□□□□□ -1.96
PCIF1Q9H4Z3 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.81□□□□□ -1.96
PCIF1Q9H4Z3 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.81□□□□□ -1.96
PCIF1Q9H4Z3 RNU6-1048P-201ENST00000364054 107 ntBASIC2.8□□□□□ -1.96
PCIF1Q9H4Z3 Y_RNA.368-201ENST00000365547 113 ntBASIC2.8□□□□□ -1.96
PCIF1Q9H4Z3 Y_RNA.793-201ENST00000411222 111 ntBASIC2.8□□□□□ -1.96
PCIF1Q9H4Z3 U8.19-201ENST00000459095 133 ntBASIC2.8□□□□□ -1.96
PCIF1Q9H4Z3 AC136628.3-201ENST00000521868 290 ntBASIC2.8□□□□□ -1.96
PCIF1Q9H4Z3 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.8□□□□□ -1.96
PCIF1Q9H4Z3 AL078604.3-201ENST00000615580 211 ntBASIC2.8□□□□□ -1.96
PCIF1Q9H4Z3 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.8□□□□□ -1.96
PCIF1Q9H4Z3 Y_RNA.172-201ENST00000363765 102 ntBASIC2.79□□□□□ -1.96
PCIF1Q9H4Z3 Y_RNA.304-201ENST00000365011 112 ntBASIC2.79□□□□□ -1.96
PCIF1Q9H4Z3 Y_RNA.310-201ENST00000365063 113 ntBASIC2.79□□□□□ -1.96
PCIF1Q9H4Z3 RNU6-47P-201ENST00000383866 107 ntBASIC2.79□□□□□ -1.96
PCIF1Q9H4Z3 SNORA72.4-201ENST00000384174 132 ntBASIC2.79□□□□□ -1.96
PCIF1Q9H4Z3 AC008134.1-201ENST00000420943 193 ntBASIC2.79□□□□□ -1.96
PCIF1Q9H4Z3 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.79□□□□□ -1.96
PCIF1Q9H4Z3 RPS26P55-201ENST00000471178 356 ntBASIC2.79□□□□□ -1.96
PCIF1Q9H4Z3 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.79□□□□□ -1.96
PCIF1Q9H4Z3 AC010598.1-201ENST00000510378 103 ntBASIC2.79□□□□□ -1.96
PCIF1Q9H4Z3 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.79□□□□□ -1.96
PCIF1Q9H4Z3 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.79□□□□□ -1.96
PCIF1Q9H4Z3 RNY3P16-201ENST00000516338 101 ntBASIC2.79□□□□□ -1.96
PCIF1Q9H4Z3 RNU6-856P-201ENST00000516959 98 ntBASIC2.79□□□□□ -1.96
PCIF1Q9H4Z3 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.79□□□□□ -1.96
PCIF1Q9H4Z3 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.79□□□□□ -1.96
PCIF1Q9H4Z3 Z83818.1-201ENST00000603584 150 ntBASIC2.79□□□□□ -1.96
PCIF1Q9H4Z3 FTX_2.1-201ENST00000618816 94 ntBASIC2.79□□□□□ -1.96
PCIF1Q9H4Z3 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.79□□□□□ -1.96
PCIF1Q9H4Z3 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
PCIF1Q9H4Z3 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.78□□□□□ -1.96
PCIF1Q9H4Z3 AL159152.1-201ENST00000635019 2587 ntBASIC2.78□□□□□ -1.96
PCIF1Q9H4Z3 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
PCIF1Q9H4Z3 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
PCIF1Q9H4Z3 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
PCIF1Q9H4Z3 SNORD114-7-201ENST00000362520 77 ntBASIC2.78□□□□□ -1.96
PCIF1Q9H4Z3 RNU6-407P-201ENST00000365280 104 ntBASIC2.78□□□□□ -1.96
PCIF1Q9H4Z3 Y_RNA.341-201ENST00000365341 102 ntBASIC2.78□□□□□ -1.96
PCIF1Q9H4Z3 Y_RNA.456-201ENST00000384232 111 ntBASIC2.78□□□□□ -1.96
PCIF1Q9H4Z3 OOSP1P1-201ENST00000423265 274 ntBASIC2.78□□□□□ -1.96
PCIF1Q9H4Z3 AC009238.1-201ENST00000442165 424 ntBASIC2.78□□□□□ -1.96
PCIF1Q9H4Z3 AC009237.6-201ENST00000446969 424 ntBASIC2.78□□□□□ -1.96
PCIF1Q9H4Z3 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC2.78□□□□□ -1.96
PCIF1Q9H4Z3 U4atac.1-201ENST00000618345 95 ntBASIC2.78□□□□□ -1.96
PCIF1Q9H4Z3 AL365265.1-201ENST00000621045 234 ntBASIC2.78□□□□□ -1.96
PCIF1Q9H4Z3 AC068700.1-201ENST00000565862 3754 ntBASIC2.78□□□□□ -1.96
PCIF1Q9H4Z3 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
PCIF1Q9H4Z3 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
PCIF1Q9H4Z3 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.77□□□□□ -1.97
PCIF1Q9H4Z3 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
PCIF1Q9H4Z3 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
PCIF1Q9H4Z3 RNU6-653P-201ENST00000363074 106 ntBASIC2.77□□□□□ -1.97
PCIF1Q9H4Z3 RNA5SP68-201ENST00000363885 119 ntBASIC2.77□□□□□ -1.97
PCIF1Q9H4Z3 RNU6-923P-201ENST00000364753 107 ntBASIC2.77□□□□□ -1.97
PCIF1Q9H4Z3 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
PCIF1Q9H4Z3 SNORA26.7-201ENST00000391288 122 ntBASIC2.77□□□□□ -1.97
PCIF1Q9H4Z3 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC2.77□□□□□ -1.97
PCIF1Q9H4Z3 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.77□□□□□ -1.97
PCIF1Q9H4Z3 RNA5SP320-201ENST00000516263 124 ntBASIC2.77□□□□□ -1.97
PCIF1Q9H4Z3 RNU6-1337P-201ENST00000516525 95 ntBASIC2.77□□□□□ -1.97
PCIF1Q9H4Z3 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.77□□□□□ -1.97
PCIF1Q9H4Z3 AP002392.1-201ENST00000537692 208 ntBASIC2.77□□□□□ -1.97
PCIF1Q9H4Z3 NDUFA5P6-201ENST00000542110 379 ntBASIC2.77□□□□□ -1.97
PCIF1Q9H4Z3 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.77□□□□□ -1.97
PCIF1Q9H4Z3 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
PCIF1Q9H4Z3 AC134026.1-201ENST00000623249 2239 ntBASIC2.76□□□□□ -1.97
PCIF1Q9H4Z3 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
PCIF1Q9H4Z3 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.76□□□□□ -1.97
PCIF1Q9H4Z3 Y_RNA.150-201ENST00000363562 102 ntBASIC2.76□□□□□ -1.97
PCIF1Q9H4Z3 RNU6-1020P-201ENST00000363684 107 ntBASIC2.76□□□□□ -1.97
PCIF1Q9H4Z3 RNU6-271P-201ENST00000363858 105 ntBASIC2.76□□□□□ -1.97
PCIF1Q9H4Z3 Y_RNA.287-201ENST00000364853 94 ntBASIC2.76□□□□□ -1.97
PCIF1Q9H4Z3 Y_RNA.308-201ENST00000365043 101 ntBASIC2.76□□□□□ -1.97
PCIF1Q9H4Z3 RNU6-1240P-201ENST00000365155 104 ntBASIC2.76□□□□□ -1.97
PCIF1Q9H4Z3 SNORD116-13-201ENST00000384408 92 ntBASIC2.76□□□□□ -1.97
PCIF1Q9H4Z3 RPL39P40-201ENST00000445481 146 ntBASIC2.76□□□□□ -1.97
PCIF1Q9H4Z3 AC107393.1-201ENST00000512403 346 ntBASIC2.76□□□□□ -1.97
PCIF1Q9H4Z3 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.76□□□□□ -1.97
PCIF1Q9H4Z3 SNORA4.4-201ENST00000515921 135 ntBASIC2.76□□□□□ -1.97
PCIF1Q9H4Z3 RNA5SP148-201ENST00000516527 94 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 136 ms