Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 MRPL35P1-201ENST00000404272 572 ntBASIC1.72□□□□□ -2.13
CCDC3Q9BQI4 SUMO2P12-201ENST00000405924 140 ntBASIC1.72□□□□□ -2.13
CCDC3Q9BQI4 Y_RNA.605-201ENST00000410577 105 ntBASIC1.72□□□□□ -2.13
CCDC3Q9BQI4 RNU6-57P-201ENST00000411348 103 ntBASIC1.72□□□□□ -2.13
CCDC3Q9BQI4 AC016909.1-201ENST00000415916 166 ntBASIC1.72□□□□□ -2.13
CCDC3Q9BQI4 AC244636.1-201ENST00000421152 228 ntBASIC1.72□□□□□ -2.13
CCDC3Q9BQI4 HMGN2P19-201ENST00000425149 265 ntBASIC1.72□□□□□ -2.13
CCDC3Q9BQI4 AC027575.1-201ENST00000481064 460 ntBASIC1.72□□□□□ -2.13
CCDC3Q9BQI4 SNORA40.14-201ENST00000516543 86 ntBASIC1.72□□□□□ -2.13
CCDC3Q9BQI4 AC018448.1-201ENST00000552843 316 ntBASIC1.72□□□□□ -2.13
CCDC3Q9BQI4 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.72□□□□□ -2.13
CCDC3Q9BQI4 MIR4272-201ENST00000635924 64 ntBASIC1.72□□□□□ -2.13
CCDC3Q9BQI4 Y_RNA.27-201ENST00000362540 103 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 RNA5SP361-201ENST00000362686 118 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 Y_RNA.496-201ENST00000384444 101 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 SNORD12B-201ENST00000410433 91 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 RNA5SP100-201ENST00000410903 110 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 RNA5SP59-201ENST00000410922 110 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 AC099677.2-201ENST00000436385 175 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 UQCRBP2-201ENST00000447827 297 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 AC093852.1-201ENST00000503587 266 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 HMGB3P17-201ENST00000504195 649 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 SNORA40.9-201ENST00000515895 93 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 RNVU1-2-201ENST00000516326 135 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 RNU6-1012P-201ENST00000516606 109 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 AC024995.1-201ENST00000523014 93 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 MIR502-201ENST00000606349 86 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 snoU13.31-201ENST00000607291 104 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 AL357075.2-201ENST00000614906 189 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 AL160413.1-201ENST00000622780 310 ntBASIC1.71□□□□□ -2.14
CCDC3Q9BQI4 SNORD114-7-201ENST00000362520 77 ntBASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 RNU6-1019P-201ENST00000364424 107 ntBASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 SNORA72.2-201ENST00000365028 127 ntBASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 RNU6-1310P-201ENST00000384153 107 ntBASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 HMGN2P34-201ENST00000437647 269 ntBASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 RPL23AP6-201ENST00000446637 472 ntBASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 SUMO1P2-201ENST00000452524 304 ntBASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 RN7SL274P-201ENST00000492268 272 ntBASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 HMGN1P13-201ENST00000505795 138 ntBASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 RNU4-77P-201ENST00000516692 156 ntBASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 MIR3618-201ENST00000580330 88 ntBASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 AC022432.1-201ENST00000595739 310 ntBASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 uc_338.22-201ENST00000622722 187 ntBASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 AC090574.1-201ENST00000623186 233 ntBASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 AL606534.2-204ENST00000635008 178 ntBASIC1.7□□□□□ -2.14
CCDC3Q9BQI4 RNU6-661P-201ENST00000362409 107 ntBASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 Y_RNA.39-201ENST00000362620 98 ntBASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 Y_RNA.498-201ENST00000384460 102 ntBASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 SNORD78.2-201ENST00000391076 69 ntBASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 RNA5SP489-201ENST00000410986 109 ntBASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 RNA5SP247-201ENST00000411181 105 ntBASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 BTF3P4-201ENST00000418852 495 ntBASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 RPL31P63-201ENST00000422565 375 ntBASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 AC069257.2-201ENST00000441819 155 ntBASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 FCF1P4-201ENST00000448326 183 ntBASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 AC112492.4-201ENST00000456549 352 ntBASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 RPL26P26-201ENST00000480251 434 ntBASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 RNU6-1041P-201ENST00000516254 102 ntBASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 MIR4419B-201ENST00000577260 68 ntBASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 AC012493.3-201ENST00000604494 112 ntBASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 AC069114.2-201ENST00000604699 304 ntBASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 AC005828.6-201ENST00000606610 232 ntBASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 AC010205.1-201ENST00000616668 449 ntBASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
CCDC3Q9BQI4 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
CCDC3Q9BQI4 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.68□□□□□ -2.14
CCDC3Q9BQI4 RNU6-1266P-201ENST00000362794 105 ntBASIC1.68□□□□□ -2.14
CCDC3Q9BQI4 RNU6-862P-201ENST00000362804 105 ntBASIC1.68□□□□□ -2.14
CCDC3Q9BQI4 RNU1-96P-201ENST00000364163 162 ntBASIC1.68□□□□□ -2.14
CCDC3Q9BQI4 Y_RNA.287-201ENST00000364853 94 ntBASIC1.68□□□□□ -2.14
CCDC3Q9BQI4 Y_RNA.526-201ENST00000384572 110 ntBASIC1.68□□□□□ -2.14
CCDC3Q9BQI4 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.68□□□□□ -2.14
CCDC3Q9BQI4 CHEK2P4-201ENST00000450340 246 ntBASIC1.68□□□□□ -2.14
CCDC3Q9BQI4 AC010598.1-201ENST00000510378 103 ntBASIC1.68□□□□□ -2.14
CCDC3Q9BQI4 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
CCDC3Q9BQI4 MIR4713-201ENST00000582691 75 ntBASIC1.68□□□□□ -2.14
CCDC3Q9BQI4 AC092447.9-201ENST00000603395 144 ntBASIC1.68□□□□□ -2.14
CCDC3Q9BQI4 AC090971.5-201ENST00000621102 293 ntBASIC1.68□□□□□ -2.14
CCDC3Q9BQI4 MIR3674-201ENST00000636576 68 ntBASIC1.68□□□□□ -2.14
CCDC3Q9BQI4 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
CCDC3Q9BQI4 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.67□□□□□ -2.14
CCDC3Q9BQI4 Y_RNA.11-201ENST00000362375 109 ntBASIC1.67□□□□□ -2.14
CCDC3Q9BQI4 RNU6-112P-201ENST00000363599 104 ntBASIC1.67□□□□□ -2.14
CCDC3Q9BQI4 SNORA63D-201ENST00000364359 132 ntBASIC1.67□□□□□ -2.14
CCDC3Q9BQI4 RNU6-296P-201ENST00000384608 107 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 186.9 ms