Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 AC110079.1-202ENST00000635213 138 ntBASIC3.8□□□□□ -1.8
USB1Q9BQ65 U6.108-201ENST00000637764 58 ntBASIC3.8□□□□□ -1.8
USB1Q9BQ65 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
USB1Q9BQ65 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.8□□□□□ -1.8
USB1Q9BQ65 AP001486.2-201ENST00000561652 5113 ntBASIC3.8□□□□□ -1.8
USB1Q9BQ65 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
USB1Q9BQ65 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
USB1Q9BQ65 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.79□□□□□ -1.8
USB1Q9BQ65 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USB1Q9BQ65 MIR383-201ENST00000362257 73 ntBASIC3.79□□□□□ -1.8
USB1Q9BQ65 RNU6-1084P-201ENST00000362498 107 ntBASIC3.79□□□□□ -1.8
USB1Q9BQ65 RNU1-23P-201ENST00000363361 144 ntBASIC3.79□□□□□ -1.8
USB1Q9BQ65 RNU6-1099P-201ENST00000363533 107 ntBASIC3.79□□□□□ -1.8
USB1Q9BQ65 Y_RNA.290-201ENST00000364879 114 ntBASIC3.79□□□□□ -1.8
USB1Q9BQ65 RNU6-1328P-201ENST00000410938 106 ntBASIC3.79□□□□□ -1.8
USB1Q9BQ65 AL445687.1-201ENST00000439946 251 ntBASIC3.79□□□□□ -1.8
USB1Q9BQ65 RNA5SP57-201ENST00000459463 123 ntBASIC3.79□□□□□ -1.8
USB1Q9BQ65 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
USB1Q9BQ65 MIR3199-1-201ENST00000582434 88 ntBASIC3.79□□□□□ -1.8
USB1Q9BQ65 MIR7157-201ENST00000635801 60 ntBASIC3.79□□□□□ -1.8
USB1Q9BQ65 MIR338-201ENST00000636369 67 ntBASIC3.79□□□□□ -1.8
USB1Q9BQ65 MIR492-201ENST00000638676 116 ntBASIC3.79□□□□□ -1.8
USB1Q9BQ65 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.79□□□□□ -1.8
USB1Q9BQ65 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
USB1Q9BQ65 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
USB1Q9BQ65 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.79□□□□□ -1.8
USB1Q9BQ65 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.8
USB1Q9BQ65 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.78□□□□□ -1.8
USB1Q9BQ65 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
USB1Q9BQ65 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.78□□□□□ -1.8
USB1Q9BQ65 Y_RNA.10-201ENST00000362371 110 ntBASIC3.78□□□□□ -1.8
USB1Q9BQ65 RNU1-132P-201ENST00000364300 164 ntBASIC3.78□□□□□ -1.8
USB1Q9BQ65 RNA5SP22-201ENST00000365393 109 ntBASIC3.78□□□□□ -1.8
USB1Q9BQ65 FO393413.1-201ENST00000402892 195 ntBASIC3.78□□□□□ -1.8
USB1Q9BQ65 RNA5SP306-201ENST00000411087 107 ntBASIC3.78□□□□□ -1.8
USB1Q9BQ65 RNU6-938P-201ENST00000411285 103 ntBASIC3.78□□□□□ -1.8
USB1Q9BQ65 RPL23AP46-201ENST00000438548 490 ntBASIC3.78□□□□□ -1.8
USB1Q9BQ65 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.78□□□□□ -1.8
USB1Q9BQ65 MRPL49P2-201ENST00000521066 465 ntBASIC3.78□□□□□ -1.8
USB1Q9BQ65 AP003484.1-201ENST00000530974 250 ntBASIC3.78□□□□□ -1.8
USB1Q9BQ65 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.78□□□□□ -1.8
USB1Q9BQ65 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC3.78□□□□□ -1.8
USB1Q9BQ65 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
USB1Q9BQ65 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
USB1Q9BQ65 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.77□□□□□ -1.81
USB1Q9BQ65 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
USB1Q9BQ65 RNU1-14P-201ENST00000362759 152 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 SNORA33-201ENST00000363664 130 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 RNY1P1-201ENST00000364372 112 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 SNORA14A-201ENST00000364773 135 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 snoU2-30.1-201ENST00000365012 70 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 Y_RNA.454-201ENST00000384224 113 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 RNA5SP323-201ENST00000391094 133 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 MIR1179-201ENST00000408703 91 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 AL157831.1-201ENST00000426134 473 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 SNRPGP14-201ENST00000435400 219 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 AL500522.2-201ENST00000448562 343 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 CYP2C59P-201ENST00000457790 269 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 RN7SL330P-201ENST00000469709 307 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 AC022137.1-201ENST00000483735 151 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 AC099522.1-202ENST00000514718 367 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 SNORA31.9-201ENST00000516429 84 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 CYP4A43P-201ENST00000568156 121 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 MIR3186-201ENST00000577404 85 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 FAM71BP1-201ENST00000604431 523 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 IGLL4P-201ENST00000614590 133 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 AC091932.4-201ENST00000623386 200 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 MIR3202-2-201ENST00000635980 79 ntBASIC3.77□□□□□ -1.81
USB1Q9BQ65 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
USB1Q9BQ65 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
USB1Q9BQ65 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
USB1Q9BQ65 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
USB1Q9BQ65 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
USB1Q9BQ65 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
USB1Q9BQ65 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.76□□□□□ -1.81
USB1Q9BQ65 RNA5SP295-201ENST00000362655 121 ntBASIC3.76□□□□□ -1.81
USB1Q9BQ65 Y_RNA.507-201ENST00000384500 99 ntBASIC3.76□□□□□ -1.81
USB1Q9BQ65 Y_RNA.531-201ENST00000384589 121 ntBASIC3.76□□□□□ -1.81
USB1Q9BQ65 MIR95-201ENST00000385072 81 ntBASIC3.76□□□□□ -1.81
USB1Q9BQ65 AL353689.1-201ENST00000438895 199 ntBASIC3.76□□□□□ -1.81
USB1Q9BQ65 AC107083.1-201ENST00000439643 279 ntBASIC3.76□□□□□ -1.81
USB1Q9BQ65 AL357552.1-201ENST00000445254 415 ntBASIC3.76□□□□□ -1.81
USB1Q9BQ65 RNU7-94P-201ENST00000459576 63 ntBASIC3.76□□□□□ -1.81
USB1Q9BQ65 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.76□□□□□ -1.81
USB1Q9BQ65 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.76□□□□□ -1.81
USB1Q9BQ65 RNA5SP49-201ENST00000516450 115 ntBASIC3.76□□□□□ -1.81
USB1Q9BQ65 RN7SKP21-201ENST00000516503 220 ntBASIC3.76□□□□□ -1.81
USB1Q9BQ65 CYCSP29-201ENST00000533731 318 ntBASIC3.76□□□□□ -1.81
USB1Q9BQ65 AC007224.1-201ENST00000564410 144 ntBASIC3.76□□□□□ -1.81
USB1Q9BQ65 MIR4762-201ENST00000585261 75 ntBASIC3.76□□□□□ -1.81
USB1Q9BQ65 HSPE1P19-201ENST00000603327 295 ntBASIC3.76□□□□□ -1.81
USB1Q9BQ65 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
USB1Q9BQ65 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
USB1Q9BQ65 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
USB1Q9BQ65 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.76□□□□□ -1.81
USB1Q9BQ65 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
USB1Q9BQ65 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.76□□□□□ -1.81
USB1Q9BQ65 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.75□□□□□ -1.81
USB1Q9BQ65 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.75□□□□□ -1.81
USB1Q9BQ65 MIR1255A-201ENST00000408338 113 ntBASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms